Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0012
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    26   4.1  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    26   5.5  
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    25   7.2  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   9.5  

>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 418 FTGGRTSCESARVGTTALPYFCREAVTRFGSKGGA 522
           F   R + E AR GTTA   F  + V + G+K G+
Sbjct: 73  FKKARDAYEKARSGTTAASSFTGKTVGKAGAKIGS 107


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -3

Query: 579 RPPTLR-L*KF*ESRYSYNGCPALRTETRYCFTAEIGQGGGTYPRGLTRRPTTS 421
           R  TLR L  F + ++   G     T T Y     IGQ GGT   G+T    TS
Sbjct: 232 RSMTLRGLGPFAKEQFYLKGLDPNVTYTAYLVEPNIGQPGGTVYPGVTFTTKTS 285


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 641 HIPSWVVKWVTRAPWTSTRKSAHPL*DYKNSKNLGI 534
           H  +W V   T   W + R +A+ L  Y++ K LGI
Sbjct: 23  HTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGI 58


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 531 YNGCPALRTETRYCFTA 481
           Y  CP L +  R+CF+A
Sbjct: 517 YPACPLLTSRVRFCFSA 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,577
Number of Sequences: 5004
Number of extensions: 41891
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)