Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0012
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2838| Best HMM Match : DUF436 (HMM E-Value=3.5)                     29   2.5  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            28   7.6  

>SB_2838| Best HMM Match : DUF436 (HMM E-Value=3.5)
          Length = 422

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 496 LLLHGRNRAGRWYLPARTHKTSY 428
           L+++G+ RAGR+YL  + HK  Y
Sbjct: 234 LIINGKPRAGRFYLLPKIHKKGY 256


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 514 PSNRNALLLHGRNRAGRWYLPARTHKTSYH 425
           PS   A L H       WY P++T    YH
Sbjct: 88  PSETQAYLCHPTKIQANWYHPSKTQANLYH 117



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -2

Query: 514 PSNRNALLLHGRNRAGRWYLPARTHKTSYH 425
           PS   A L H       WY P++T    YH
Sbjct: 620 PSETQAYLCHPTKIQANWYHPSKTQANLYH 649


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,810,036
Number of Sequences: 59808
Number of extensions: 311418
Number of successful extensions: 826
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)