Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0011
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0920 + 20826876-20829293                                         30   0.63 
11_01_0523 - 4109070-4109984,4110532-4110936                           26   7.7  

>04_03_0920 + 20826876-20829293
          Length = 805

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 149 LVSINDKLKLIFFSHGRLKTQTNTNPHFCIYFEKMA 42
           LVS N K  L FF  G   + TN N +  I+F K++
Sbjct: 41  LVSNNSKFALGFFKPGNESSYTNHNSYLGIWFNKVS 76


>11_01_0523 - 4109070-4109984,4110532-4110936
          Length = 439

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 3   KLIPIKKVAVLDKSHFLKIYAKVWICICLSFQPPMTEKY*LQFIIN 140
           ++  +K++     S F  + A VW C C++ + P+  +  ++F +N
Sbjct: 233 QIATLKRICGGGASTFSAVTALVWQCACVARRLPLCSQTLVRFPVN 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,501,854
Number of Sequences: 37544
Number of extensions: 109752
Number of successful extensions: 191
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)