Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0011
         (360 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X65103-1|CAA46228.1|  122|Drosophila melanogaster shaking-B neur...    28   3.1  
M98872-1|AAA89079.1|  122|Drosophila melanogaster shaking-B prot...    28   3.1  
AE014298-3051|AAN09537.1|  122|Drosophila melanogaster CG32508-P...    28   3.1  
AE014296-1942|AAF50071.2|  342|Drosophila melanogaster CG6168-PB...    27   5.4  

>X65103-1|CAA46228.1|  122|Drosophila melanogaster shaking-B neural
           protein protein.
          Length = 122

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 36  DKSHFLKIYAKVWICICLSFQP 101
           DK H+ K Y   W+C CL FQP
Sbjct: 103 DKKHY-KYYQ--WVCFCLFFQP 121


>M98872-1|AAA89079.1|  122|Drosophila melanogaster shaking-B
           protein.
          Length = 122

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 36  DKSHFLKIYAKVWICICLSFQP 101
           DK H+ K Y   W+C CL FQP
Sbjct: 103 DKKHY-KYYQ--WVCFCLFFQP 121


>AE014298-3051|AAN09537.1|  122|Drosophila melanogaster CG32508-PB,
           isoform B protein.
          Length = 122

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 36  DKSHFLKIYAKVWICICLSFQP 101
           DK H+ K Y   W+C CL FQP
Sbjct: 103 DKKHY-KYYQ--WVCFCLFFQP 121


>AE014296-1942|AAF50071.2|  342|Drosophila melanogaster CG6168-PB
           protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = +1

Query: 109 LKNINFNLSL-IETKKY*IRSEM----LIIF*NKRKQNNLLFSCYYILFYF*D 252
           LK +N+N+ L I T+K  I S +    ++   N + Q  L+F C+Y   YF D
Sbjct: 92  LKKLNWNVELDIFTQKVPIMSNVTFHNIVARQNPQTQRYLMFGCHYDSKYFKD 144


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,317,881
Number of Sequences: 53049
Number of extensions: 208911
Number of successful extensions: 287
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 901135692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)