Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0011
         (360 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66980.1 68418.m08444 transcriptional factor B3 family protei...    27   3.8  
At1g55325.1 68414.m06320 expressed protein                             26   8.7  

>At5g66980.1 68418.m08444 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 334

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 30  VLDKSHFLKIYAKVWICICLSFQPPMTEKY*LQFIINRN 146
           +L+     K   + W+C C S +  +T K   +FI+  N
Sbjct: 265 ILNHDRGFKFSHESWLCFCKSHEMILTNKCLFEFIVPSN 303


>At1g55325.1 68414.m06320 expressed protein
          Length = 1921

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 137 NDKLKLIFFSHGRLKTQT 84
           ND +K ++FS G LKT T
Sbjct: 264 NDLVKQVYFSSGNLKTST 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,702,813
Number of Sequences: 28952
Number of extensions: 108632
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)