Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0010
(515 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 93 5e-18
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 85 1e-15
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 85 1e-15
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 77 2e-13
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 76 4e-13
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 74 2e-12
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 73 4e-12
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 73 4e-12
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 73 4e-12
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 73 5e-12
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 73 5e-12
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 72 7e-12
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 72 9e-12
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 72 9e-12
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 72 9e-12
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 71 1e-11
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 70 3e-11
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 69 5e-11
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 69 8e-11
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 67 2e-10
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 66 3e-10
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 64 2e-09
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 64 2e-09
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 64 2e-09
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 64 2e-09
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 64 2e-09
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 63 3e-09
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 63 4e-09
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 62 1e-08
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 62 1e-08
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 60 2e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 5e-08
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 59 7e-08
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 58 9e-08
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 53 4e-06
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 53 4e-06
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 52 1e-05
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 50 3e-05
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 48 2e-04
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 45 0.001
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 44 0.002
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 42 0.006
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 41 0.015
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 41 0.015
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 40 0.045
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 39 0.059
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 38 0.14
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 37 0.31
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 37 0.31
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 36 0.72
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 36 0.72
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 35 0.96
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 35 0.96
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 33 2.9
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 33 5.1
UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;... 33 5.1
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 32 6.8
UniRef50_Q8ID15 Cluster: Putative uncharacterized protein MAL13P... 32 6.8
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 32 8.9
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 92.7 bits (220), Expect = 5e-18
Identities = 60/143 (41%), Positives = 75/143 (52%), Gaps = 2/143 (1%)
Frame = -1
Query: 440 DEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNIREGGRSQNLILF 261
+E PAKC+EKI STD P CAI SGG TVHPVP P STI L + ++EGG +QNL+LF
Sbjct: 78 EETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIPLNKSKVKEGGSNQNLMLF 137
Query: 260 IRGMXXXXXXXXXXLINFQILQL**V*L*KKLXXK--HVLLQ*YYKFXHLQLMILDFLIQ 87
IRG F + KK+ K V + + F + +
Sbjct: 138 IRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTLIWSF---PIKLPGCPNS 194
Query: 86 LEIKSLKDVPIIPDQIPKIKYNV 18
IKSL DVP +P PK+KYNV
Sbjct: 195 ARIKSLSDVPTMPAHAPKMKYNV 217
Score = 60.1 bits (139), Expect = 3e-08
Identities = 35/72 (48%), Positives = 40/72 (55%)
Frame = -3
Query: 297 KGGG*ESKSYIIYSWNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*IXSS 118
K GG + NA+SGAP++ GTNQFPNPP KA AVT+ L I S
Sbjct: 126 KEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTL-IWSF 184
Query: 117 PINDPGFPNSAR 82
PI PG PNSAR
Sbjct: 185 PIKLPGCPNSAR 196
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 84.6 bits (200), Expect = 1e-15
Identities = 43/63 (68%), Positives = 45/63 (71%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAG
Sbjct: 92 PRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAG 151
Query: 433 ISS 441
ISS
Sbjct: 152 ISS 154
Score = 68.5 bits (160), Expect = 8e-11
Identities = 35/57 (61%), Positives = 37/57 (64%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
RAELG PGSLIGDD IYNTIVTAHA N LVPL+LGAPD+AF
Sbjct: 35 RAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAF 91
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 84.6 bits (200), Expect = 1e-15
Identities = 43/63 (68%), Positives = 45/63 (71%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAG
Sbjct: 68 PRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAG 127
Query: 433 ISS 441
ISS
Sbjct: 128 ISS 130
Score = 66.5 bits (155), Expect = 3e-10
Identities = 33/57 (57%), Positives = 36/57 (63%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R ELG PGSLIGDD IYNTIVTAHA N L+PL+LGAPD+AF
Sbjct: 11 RTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAF 67
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 77.0 bits (181), Expect = 2e-13
Identities = 38/63 (60%), Positives = 42/63 (66%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NN+ F VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG
Sbjct: 78 PRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAG 137
Query: 433 ISS 441
+SS
Sbjct: 138 VSS 140
Score = 60.1 bits (139), Expect = 3e-08
Identities = 29/57 (50%), Positives = 34/57 (59%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R ELG PGS IG+D +YN +VTAHA N LVPL+LGAPD+AF
Sbjct: 21 RVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAF 77
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 76.2 bits (179), Expect = 4e-13
Identities = 39/63 (61%), Positives = 43/63 (68%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NN+ F VE GAGTG TVYPPL+ N+AH G SVDLAIFSLHLAG
Sbjct: 96 PRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAG 155
Query: 433 ISS 441
ISS
Sbjct: 156 ISS 158
Score = 63.7 bits (148), Expect = 2e-09
Identities = 31/57 (54%), Positives = 36/57 (63%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
RAELG PG+L+GDD IYN IVTAHA N LVPL++GAPD+AF
Sbjct: 39 RAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAF 95
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 73.7 bits (173), Expect = 2e-12
Identities = 37/63 (58%), Positives = 42/63 (66%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NNI F +VE GAGTG TVYPPL+S AH G SVD+AIFSLHLAG
Sbjct: 96 PRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAG 155
Query: 433 ISS 441
+SS
Sbjct: 156 LSS 158
Score = 58.8 bits (136), Expect = 7e-08
Identities = 31/73 (42%), Positives = 39/73 (53%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFHE* 262
R EL +PGS++GDD +YN IVTAHA N VPL++GAPD+AF
Sbjct: 39 RLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRL 98
Query: 263 II*DFDSYPPPLY 301
F PP L+
Sbjct: 99 NNISFWLLPPALF 111
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 72.9 bits (171), Expect = 4e-12
Identities = 36/63 (57%), Positives = 41/63 (65%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NN+ F +E GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG
Sbjct: 84 PRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAG 143
Query: 433 ISS 441
ISS
Sbjct: 144 ISS 146
Score = 60.9 bits (141), Expect = 2e-08
Identities = 29/57 (50%), Positives = 35/57 (61%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
RAEL PG+L+GDD IYN IVTAHA N L+PL++GAPD+AF
Sbjct: 27 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAF 83
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 72.9 bits (171), Expect = 4e-12
Identities = 36/63 (57%), Positives = 41/63 (65%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG
Sbjct: 95 PRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAG 154
Query: 433 ISS 441
+SS
Sbjct: 155 VSS 157
Score = 61.3 bits (142), Expect = 1e-08
Identities = 30/57 (52%), Positives = 35/57 (61%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
RAEL PG+L+GDD IYN IVTAHA N LVPL++GAPD+AF
Sbjct: 38 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMIGAPDMAF 94
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 72.9 bits (171), Expect = 4e-12
Identities = 36/63 (57%), Positives = 41/63 (65%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NN+ F VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG
Sbjct: 95 PRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAG 154
Query: 433 ISS 441
+SS
Sbjct: 155 VSS 157
Score = 61.3 bits (142), Expect = 1e-08
Identities = 30/57 (52%), Positives = 35/57 (61%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
RAEL PG+L+GDD IYN IVTAHA N LVPL++GAPD+AF
Sbjct: 38 RAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNWLVPLMIGAPDMAF 94
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 72.5 bits (170), Expect = 5e-12
Identities = 38/63 (60%), Positives = 41/63 (65%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PRINNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL
Sbjct: 96 PRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTS 155
Query: 433 ISS 441
ISS
Sbjct: 156 ISS 158
Score = 35.9 bits (79), Expect = 0.55
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PGS L G+ ++N +V HA N L+PL++GA D AF
Sbjct: 37 RLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAF 95
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 72.5 bits (170), Expect = 5e-12
Identities = 38/63 (60%), Positives = 41/63 (65%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PRINNI F +VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL
Sbjct: 96 PRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTS 155
Query: 433 ISS 441
ISS
Sbjct: 156 ISS 158
Score = 35.9 bits (79), Expect = 0.55
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PGS L G+ ++N +V HA N L+PL++GA D AF
Sbjct: 37 RLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGATDTAF 95
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 72.1 bits (169), Expect = 7e-12
Identities = 35/63 (55%), Positives = 41/63 (65%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NN+ F +VE GAGTG TVYPPL+ N +H G SVDL IFSLHLAG
Sbjct: 95 PRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAG 154
Query: 433 ISS 441
+SS
Sbjct: 155 VSS 157
Score = 61.7 bits (143), Expect = 1e-08
Identities = 30/57 (52%), Positives = 36/57 (63%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
RAELG PG+L+G+D IYN IVTAHA N LVPL++GAPD+AF
Sbjct: 38 RAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAF 94
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 71.7 bits (168), Expect = 9e-12
Identities = 37/63 (58%), Positives = 40/63 (63%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+G
Sbjct: 95 PRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSG 154
Query: 433 ISS 441
ISS
Sbjct: 155 ISS 157
Score = 44.8 bits (101), Expect = 0.001
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PG L GD +YN I+TAHA N LVP+++GAPD+AF
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAF 94
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 71.7 bits (168), Expect = 9e-12
Identities = 37/63 (58%), Positives = 40/63 (63%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+G
Sbjct: 95 PRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSG 154
Query: 433 ISS 441
ISS
Sbjct: 155 ISS 157
Score = 44.8 bits (101), Expect = 0.001
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PG L GD +YN I+TAHA N LVP+++GAPD+AF
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAF 94
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 71.7 bits (168), Expect = 9e-12
Identities = 37/63 (58%), Positives = 40/63 (63%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NNI F VE GAGTG TVYPPLS +H G SVDLAIFSLHL+G
Sbjct: 95 PRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSG 154
Query: 433 ISS 441
ISS
Sbjct: 155 ISS 157
Score = 44.8 bits (101), Expect = 0.001
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PG L GD +YN I+TAHA N LVP+++GAPD+AF
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAF 94
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 71.3 bits (167), Expect = 1e-11
Identities = 38/63 (60%), Positives = 41/63 (65%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PRIN+I F +VE+GAGTG TVYPPLSS AH G SVDLAIFSLHL
Sbjct: 96 PRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFSLHLTS 155
Query: 433 ISS 441
ISS
Sbjct: 156 ISS 158
Score = 34.7 bits (76), Expect = 1.3
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PGS L G+ ++N +V HA N ++PL++GA D++F
Sbjct: 37 RMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYMLPLMIGATDMSF 95
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 70.1 bits (164), Expect = 3e-11
Identities = 36/63 (57%), Positives = 41/63 (65%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PRINNI F +VE+GAGTG TVYPPL+S AH G SVDLAIF+LH+
Sbjct: 96 PRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGPSVDLAIFALHMTS 155
Query: 433 ISS 441
ISS
Sbjct: 156 ISS 158
Score = 33.9 bits (74), Expect = 2.2
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PG L G++ ++N +V HA N ++PL++GA D AF
Sbjct: 37 RLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYMLPLMIGATDTAF 95
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 69.3 bits (162), Expect = 5e-11
Identities = 34/63 (53%), Positives = 41/63 (65%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NNI F +VE G+GTG TVYPPLS +H G +VDLAIFSLHL+G
Sbjct: 98 PRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHLSG 157
Query: 433 ISS 441
+SS
Sbjct: 158 VSS 160
Score = 43.2 bits (97), Expect = 0.004
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGSLI--GDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PG I G+ +YN ++TAHA N VP+++GAPD+AF
Sbjct: 39 RMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGAPDMAF 97
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 68.5 bits (160), Expect = 8e-11
Identities = 37/63 (58%), Positives = 41/63 (65%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR N+ F VE GAGTG TV PPLS+NIAH G SVDLAIFSLH+AG
Sbjct: 14 PRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVDLAIFSLHMAG 73
Query: 433 ISS 441
+ S
Sbjct: 74 VXS 76
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 67.3 bits (157), Expect = 2e-10
Identities = 34/63 (53%), Positives = 40/63 (63%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NNI F +VE G GTG TVYPPLSS +H G +VDLAIFSLH++G
Sbjct: 103 PRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHSGGAVDLAIFSLHISG 162
Query: 433 ISS 441
SS
Sbjct: 163 ASS 165
Score = 43.6 bits (98), Expect = 0.003
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL P + L+G+ IYN ++TAHA N LVP+++G+PD+AF
Sbjct: 44 RMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAF 102
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 66.5 bits (155), Expect = 3e-10
Identities = 33/63 (52%), Positives = 39/63 (61%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NNI + +ENG GTG T+YPPLS +H G SVDLAIF LHL+G
Sbjct: 96 PRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSGPSVDLAIFGLHLSG 155
Query: 433 ISS 441
ISS
Sbjct: 156 ISS 158
Score = 42.3 bits (95), Expect = 0.006
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 83 RAELGNPG-SLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PG I D+ +YN+I+TAHA N L+PL LG PD+ F
Sbjct: 38 RLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGNFLLPLGLGGPDMGF 95
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 64.1 bits (149), Expect = 2e-09
Identities = 30/63 (47%), Positives = 37/63 (58%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NN+ + I+ENG GTG T+YPPLS +H VDL IF LHL+G
Sbjct: 122 PRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGLHLSG 181
Query: 433 ISS 441
ISS
Sbjct: 182 ISS 184
Score = 41.1 bits (92), Expect = 0.015
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 83 RAELGNPG-SLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PG I D+ +YN+I+T+H N L+P+++G PD+AF
Sbjct: 64 RLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGNFLLPILIGGPDMAF 121
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 63.7 bits (148), Expect = 2e-09
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G
Sbjct: 113 PRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSG 172
Query: 433 ISS 441
+SS
Sbjct: 173 LSS 175
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 63.7 bits (148), Expect = 2e-09
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G
Sbjct: 113 PRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSG 172
Query: 433 ISS 441
+SS
Sbjct: 173 LSS 175
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 63.7 bits (148), Expect = 2e-09
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G
Sbjct: 113 PRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSG 172
Query: 433 ISS 441
+SS
Sbjct: 173 LSS 175
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 63.7 bits (148), Expect = 2e-09
Identities = 28/63 (44%), Positives = 41/63 (65%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PRINN+ F +++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G
Sbjct: 113 PRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSG 172
Query: 433 ISS 441
+SS
Sbjct: 173 LSS 175
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 63.3 bits (147), Expect = 3e-09
Identities = 32/63 (50%), Positives = 36/63 (57%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NN+ F + G GTG TVYPPLS + H G SVDL IFSLHLAG
Sbjct: 79 PRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAG 138
Query: 433 ISS 441
SS
Sbjct: 139 ASS 141
Score = 58.0 bits (134), Expect = 1e-07
Identities = 28/57 (49%), Positives = 36/57 (63%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R ELG PGSLIG+D IYN+IVT+HA N L+PL+LG+PD++F
Sbjct: 22 RLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSF 78
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 62.9 bits (146), Expect = 4e-09
Identities = 31/55 (56%), Positives = 35/55 (63%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 417
PR+NN+ F +VENGAGTG TVYPPLSS AH G SVDLAI+S
Sbjct: 11 PRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVDLAIYS 65
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 61.7 bits (143), Expect = 1e-08
Identities = 32/63 (50%), Positives = 34/63 (53%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NN F E G GTG TVYPPLSS +H G SVDL IFS HL G
Sbjct: 99 PRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSHSGASVDLMIFSFHLVG 158
Query: 433 ISS 441
I S
Sbjct: 159 IGS 161
Score = 37.1 bits (82), Expect = 0.24
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = +2
Query: 23 YILFLVFDQE*LEHL*DF*FRAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXX 196
Y+ F VF+ L L R EL PG L G+ YN I T H
Sbjct: 21 YLFFGVFNGF-LAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILF 79
Query: 197 XXXXN*LVPLILGAPDIAF 253
N VP+++GAPD++F
Sbjct: 80 GGFGNYFVPILIGAPDMSF 98
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 61.7 bits (143), Expect = 1e-08
Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNIAHRGRSVDLAIFSL 420
PR+NNI F I+E G GTG T+ YPPLS +H G SVDLAIF+L
Sbjct: 124 PRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVDLAIFAL 183
Query: 421 HLAGISS 441
HL+G+SS
Sbjct: 184 HLSGVSS 190
Score = 43.6 bits (98), Expect = 0.003
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 83 RAELGNPG-SLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PG I ++ +YN+I+TAHA N L+PL++G PD+AF
Sbjct: 66 RLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGNFLMPLMIGGPDMAF 123
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 60.5 bits (140), Expect = 2e-08
Identities = 32/62 (51%), Positives = 38/62 (61%)
Frame = +1
Query: 256 RINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 435
R+NNI F +VE GAGTG TVY PL+ +H G +VDLAIFSLHL+G
Sbjct: 102 RLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSLHLSGF 161
Query: 436 SS 441
SS
Sbjct: 162 SS 163
Score = 39.5 bits (88), Expect = 0.045
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL N GS L G+ +N ++TAHA N L+PL+LGA D+AF
Sbjct: 42 RLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAF 100
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 5e-08
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1
Query: 319 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 441
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 58.8 bits (136), Expect = 7e-08
Identities = 28/57 (49%), Positives = 33/57 (57%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R ELG PGSL+ DD +YN +VTAH N LVPL+LGAPD+AF
Sbjct: 22 RTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAF 78
Score = 33.1 bits (72), Expect = 3.9
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 388 GRSVDLAIFSLHLAGISS 441
G SVDLAIF LHLAG+SS
Sbjct: 122 GPSVDLAIFPLHLAGVSS 139
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 58.4 bits (135), Expect = 9e-08
Identities = 31/57 (54%), Positives = 36/57 (63%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
RAELG PG+L+GDD N IVTAHA N LVPL++GAPD+AF
Sbjct: 39 RAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNWLVPLMIGAPDMAF 95
Score = 36.7 bits (81), Expect = 0.31
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 369
PR+NN+ F VE GAGTG TVYPPL+
Sbjct: 96 PRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 52.8 bits (121), Expect = 4e-06
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G
Sbjct: 201 PRLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSG 260
Query: 433 ISS 441
SS
Sbjct: 261 ASS 263
Score = 31.9 bits (69), Expect = 8.9
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGSLIG--DDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
+A LG L G D ++N ++T H N +PL++GAPD+AF
Sbjct: 142 QALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAF 200
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 52.8 bits (121), Expect = 4e-06
Identities = 29/63 (46%), Positives = 34/63 (53%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+ N+ F + G G VYPP SS +AH +VDL IF LHLAG
Sbjct: 85 PRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFXLHLAG 144
Query: 433 ISS 441
ISS
Sbjct: 145 ISS 147
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 51.6 bits (118), Expect = 1e-05
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NN+ + G G G T+YPPLS++ G +DLA+FSLH+AG
Sbjct: 97 PRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDGLPIDLAVFSLHMAG 156
Query: 433 ISS 441
+SS
Sbjct: 157 MSS 159
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 50.0 bits (114), Expect = 3e-05
Identities = 31/67 (46%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSL 420
PR+NNI F V NGAGTG TVY PLS++ G +VD+AI SL
Sbjct: 135 PRMNNISFWLLIPAFALLLGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSL 193
Query: 421 HLAGISS 441
H+AG SS
Sbjct: 194 HIAGASS 200
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 47.6 bits (108), Expect = 2e-04
Identities = 21/27 (77%), Positives = 25/27 (92%)
Frame = +1
Query: 361 PLSSNIAHRGRSVDLAIFSLHLAGISS 441
PL+S+IAH G SVD+AIFSLHLAG+SS
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSS 98
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 44.8 bits (101), Expect = 0.001
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PG L GD +YN I+TAHA N LVP+++GAPD+AF
Sbjct: 36 RMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAF 94
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 44.0 bits (99), Expect = 0.002
Identities = 22/63 (34%), Positives = 30/63 (47%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+NN+ F + E G G G T+YP L H + D +F++HL G
Sbjct: 98 PRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLG 157
Query: 433 ISS 441
ISS
Sbjct: 158 ISS 160
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 42.3 bits (95), Expect = 0.006
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGSLI--GDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PG+ I G+ +YN ++TAHA N VP+++G+PD+AF
Sbjct: 40 RMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFGNWFVPILIGSPDMAF 98
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 41.1 bits (92), Expect = 0.015
Identities = 23/63 (36%), Positives = 34/63 (53%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+N +E G+GTG T+YPPLS+++++ G +D IF L AG
Sbjct: 103 PRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAG 160
Query: 433 ISS 441
I+S
Sbjct: 161 IAS 163
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 41.1 bits (92), Expect = 0.015
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLA 429
PRIN+I E G GTG T+YPPLS+++ +VD+ IF L ++
Sbjct: 100 PRINSISLLLQPIAFVLVILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVS 159
Query: 430 GISS 441
G++S
Sbjct: 160 GVAS 163
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 39.5 bits (88), Expect = 0.045
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL N GS L G+ +N ++TAHA N L+PL+LGA D+AF
Sbjct: 42 RLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFGNYLMPLMLGASDMAF 100
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 39.1 bits (87), Expect = 0.059
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +1
Query: 331 GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 441
G G G T+YPPLS G VD +FSLHLAG+SS
Sbjct: 217 GCGIGWTLYPPLSI-WEGSGFGVDYLMFSLHLAGVSS 252
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 37.9 bits (84), Expect = 0.14
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL +PG G +YN+++T H N ++PL+LGAP++AF
Sbjct: 47 RFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGNWMLPLMLGAPEMAF 105
Score = 33.5 bits (73), Expect = 2.9
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 432
PR+N + F + G G+ T YPPLS S+D I LH G
Sbjct: 106 PRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQPELSLDTMILGLHTVG 164
Query: 433 ISS 441
I S
Sbjct: 165 IGS 167
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 36.7 bits (81), Expect = 0.31
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +1
Query: 334 AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 441
A G T YPPLSS SV+ ++FSLHLAGI+S
Sbjct: 112 ASAGWTFYPPLSS----LSPSVEFSVFSLHLAGIAS 143
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 36.7 bits (81), Expect = 0.31
Identities = 22/55 (40%), Positives = 26/55 (47%)
Frame = +3
Query: 258 NK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYFFTT 422
NK +KIL TPL Y N C K C + +NSLP Y T R +F T
Sbjct: 81 NKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPT 135
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 35.5 bits (78), Expect = 0.72
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PG I D YN T H N ++PL+LGA D+AF
Sbjct: 68 RVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLMLGAKDVAF 124
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 35.5 bits (78), Expect = 0.72
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL +PG + + YN+++T+H N L+PL++GA D+AF
Sbjct: 120 RIELADPGMTVISNTFYNSLLTSHG-ITMLFLFATPIIAAFSNYLIPLLIGADDMAF 175
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 35.1 bits (77), Expect = 0.96
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +2
Query: 83 RAELGNPGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PG I D YN + T H N L+P+++GA D+AF
Sbjct: 61 RLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIGAKDVAF 117
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 35.1 bits (77), Expect = 0.96
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 253 PRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAHR-GRSVDLAIFSLHL 426
PR+N I F ++ +G T+YPPLS+ A G ++DL++ +H+
Sbjct: 105 PRMNGISFWMLIVGVVIFVISNVLMSKPISSGWTLYPPLSTRDADNIGVNIDLSLLVVHV 164
Query: 427 AGISS 441
GISS
Sbjct: 165 LGISS 169
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 33.5 bits (73), Expect = 2.9
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 RAELGNPGS--LIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL PG+ L G+ ++N +V HA N L+PL++GA D++F
Sbjct: 37 RLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLLPLMIGASDMSF 95
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 32.7 bits (71), Expect = 5.1
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 334 AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 441
AG G T Y PLS+N+ G L + ++ + G+SS
Sbjct: 155 AGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSS 190
>UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;
n=21; Neocoleoidea|Rep: NADH-ubiquinone oxidoreductase
chain 2 - Sepia officinalis (Common cuttlefish)
Length = 375
Score = 32.7 bits (71), Expect = 5.1
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +3
Query: 3 ARGYWNIIFYFWYLI 47
++ YWNI+F+FWYLI
Sbjct: 345 SQSYWNIMFHFWYLI 359
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 32.3 bits (70), Expect = 6.8
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 101 PGSLIGDDXIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
PG + D YN ++T H N L+PL++GA D+AF
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAF 52
>UniRef50_Q8ID15 Cluster: Putative uncharacterized protein
MAL13P1.352; n=2; Plasmodium|Rep: Putative
uncharacterized protein MAL13P1.352 - Plasmodium
falciparum (isolate 3D7)
Length = 1106
Score = 32.3 bits (70), Expect = 6.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +3
Query: 285 TPLPYIINFKKNCRKWCRN 341
T L Y + KK+CRKWCRN
Sbjct: 697 TKLMYCVIKKKHCRKWCRN 715
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 31.9 bits (69), Expect = 8.9
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 83 RAELGNPGSLIGDDX-IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 253
R EL G I DD +YNT + H N +PL++GA D+AF
Sbjct: 40 RLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKDVAF 97
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 367,736,651
Number of Sequences: 1657284
Number of extensions: 5870396
Number of successful extensions: 10823
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 10504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10790
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -