Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0005
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    27   1.8  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.4  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    25   7.2  
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    24   9.5  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     24   9.5  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 1  GTRESVPCPIEGISLYLSECY 63
          GT+E + CP++G++L  S  Y
Sbjct: 4  GTKEQIECPLKGVTLLNSPRY 24


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 254 SISVYCRYIVNIGTLLCALII 192
           SI  Y +   N GT+LCALI+
Sbjct: 138 SIPAYVQLTNNHGTILCALIL 158


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 281 MYIMFIKS*SISVYCRYIVNIGTLLCALIIVCIVDTVYT 165
           +Y+ +I+  + S+ C Y++ + +L  AL I   +  VY+
Sbjct: 359 LYMAYIERKTTSLVCLYLLGVESLAPALRIPTALPPVYS 397


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 220 ILTMYRQYTDID*LLINIMYIQNENAAKFLVIEETVID 333
           ILT+ R    ID  ++ IM +QN +A+   +I   ++D
Sbjct: 174 ILTIRRPDEPIDLHMVEIMKMQNRSASDTQLIRGLLLD 211


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 73  KKKRNIRLNIMKFPRSD 23
           +KK N+ LN++K P+ D
Sbjct: 286 RKKENVNLNLVKTPKYD 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,695,199
Number of Sequences: 5004
Number of extensions: 31390
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)