Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0005
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266     28   4.0  
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846...    27   5.3  
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635...    27   7.1  

>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
          Length = 272

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = -3

Query: 278 YIMFIKS*SISVYCRYIVNIGTLLCAL---IIVCIVDTVYTL 162
           +I+F +S S+  YC + +++G L+C L   +I+ I+    TL
Sbjct: 189 HIIFFQSLSLLGYCLFPLDVGALVCMLKDNVILKIIVVTVTL 230


>05_04_0443 -
           21283680-21283940,21284044-21284118,21284620-21284649,
           21286744-21287247
          Length = 289

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 275 IMFIKS*SISVYCRYIVNIGTLLCAL---IIVCIVDTVYTL 162
           I F +S S+  YC + +++G L+C L   +++ I+  V TL
Sbjct: 207 INFFQSLSLLGYCLFPLDVGALICMLKDNVLLKIIAVVVTL 247


>08_02_1457 + 27260841-27260965,27261126-27261246,27263455-27263543,
            27263776-27263860,27263970-27264074,27264446-27264527,
            27264573-27264686,27265029-27265330,27265519-27266114,
            27266216-27266376,27266489-27266592,27266697-27266856,
            27266942-27267105,27267213-27267545,27267640-27267930,
            27268276-27268359,27268430-27268563,27268665-27268892,
            27268993-27269164,27269263-27269517,27269778-27270047
          Length = 1324

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 310  PKIWQHFRSECT*CL 266
            PK WQ FR++C  CL
Sbjct: 1040 PKYWQDFRAQCMACL 1054


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,578,153
Number of Sequences: 37544
Number of extensions: 152254
Number of successful extensions: 242
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)