Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0005
         (454 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.5  
SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  

>SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1562

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 31   EGISLYLSECYVFFSXSRSINGNCMRFF 114
            E I +YL +     S ++SI GNC+R F
Sbjct: 1344 EAIEMYLEDQNKGLSDAQSIPGNCVRLF 1371


>SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1761

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 426  LYKISIRYKIKLVKLXXK*LKKNQFGSFKCKIYHSFFNDQK 304
            L K  I+ K+K+ K   + L+ N+  +F   + HS F   K
Sbjct: 1055 LQKTHIKLKVKITKANGRTLEVNEAAAFVNNVGHSLFRQVK 1095


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,834,342
Number of Sequences: 59808
Number of extensions: 206817
Number of successful extensions: 366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)