Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0005
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55373-2|AAX88832.1|  349|Caenorhabditis elegans Serpentine rece...    31   0.30 
AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine re...    30   0.69 
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine rece...    29   1.6  
U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence ...    29   1.6  
AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched relat...    27   4.8  
AF068709-12|AAO26013.1|  304|Caenorhabditis elegans Serpentine r...    27   6.4  
Z50797-5|CAA90675.1|  342|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U55373-2|AAX88832.1|  349|Caenorhabditis elegans Serpentine
           receptor, class h protein76, isoform b protein.
          Length = 349

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 348 SFKCKIYHSFFNDQKFGSIFVLNVHNVY*ELVYIGVLSVHCQYW 217
           S+ C   +S + +Q   + FVL V N Y  +  IG++S H  YW
Sbjct: 279 SYCCYSVYSNYYNQMLNNFFVL-VFNFYGTVSTIGLISCHTAYW 321


>AF068709-7|AAO26014.1|  317|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 60 protein.
          Length = 317

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -2

Query: 351 GSFKCKIYHSF-FNDQKFGSIFVLNVHNVY*ELVYIGVLSVHCQYWYSALCFNYSLYSRH 175
           G+     YH++ F   +F +  +L++H +   +V+ G     C  WY A+  +  +YS  
Sbjct: 96  GALTLAKYHAYWFMHMQFCATAMLSLHRIL-TVVFAGKFERFCYRWYPAIGISMFVYSHL 154

Query: 174 GLHIMLDFSL*VNFKN 127
              +   F+L V+  N
Sbjct: 155 PKLLWPGFTLEVHIVN 170


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 34  GISLYLSECYVFFSXSRSINGNCMRFFALFSIF 132
           G+   L E Y F +  + IN    RFF LFSIF
Sbjct: 142 GLFCLLGEYYAFDAICKKINIATGRFFILFSIF 174


>U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 10 protein.
          Length = 300

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
 Frame = -3

Query: 350 DLLNVKSITVSSMTKNLAAFSF*MYIMFIKS*S------ISVYCRYIVNI--GTLLCALI 195
           +L+N+ ++ ++S+    + F+  M I FIK  +      I  + R  V+I  G L CA +
Sbjct: 14  NLMNLSAVVITSIGILSSFFTIFMNIYFIKKITRIRHRMIFFFYRIFVDISYGVLACAYM 73

Query: 194 IVCIVDTVYT 165
           I CI+ + +T
Sbjct: 74  IFCILYSYFT 83


>U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 10 protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 196 IKAQSRVP-ILTMYRQYTDID*LLINIMYIQNENAAKFLVIEETVIDFTFK 345
           I ++  VP I+    Q+T++  ++I+++ +++EN  K   +EE  +DF  K
Sbjct: 285 INSEKNVPVIIEKIHQWTEVREVIIDLIDVESENLRKLKEMEEQ-LDFMMK 334


>AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched related
           family protein 16 protein.
          Length = 881

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 251 ISVYCRYIVNIGTLLCALIIVC 186
           +S YCR++ +  T LC L+++C
Sbjct: 393 VSRYCRFLKDWKTRLCLLLVLC 414


>AF068709-12|AAO26013.1|  304|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 57 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 336 KIYHSFFNDQKFGSIFVLNVHNVY*ELVYIGVLSVHCQYWYSALCFNYSLYS 181
           K +  FFN+ +F    VLN+H +   L  +      C+Y Y  +   + +YS
Sbjct: 106 KYFSLFFNNMQFLLAAVLNIHRISSILFPMSCEKFWCRY-YILVTLAFCIYS 156


>Z50797-5|CAA90675.1|  342|Caenorhabditis elegans Hypothetical
           protein T22H6.4 protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 83  VPLTGIV*G-FLLCFRFLKFTYKLKSNIMCKPCRLYRL*LKH 205
           VPLT +  G F LC   L   +  +   +CKP ++Y    KH
Sbjct: 86  VPLTAVYCGSFGLCISLLALHFFYRYIAVCKPEKMYYFDEKH 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,222,036
Number of Sequences: 27780
Number of extensions: 171931
Number of successful extensions: 407
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)