Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0004
(520 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 109 2e-25
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 63 3e-11
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 50 2e-07
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 40 2e-04
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 38 7e-04
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 33 0.019
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 33 0.034
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 31 0.078
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.55
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 28 0.96
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 28 0.96
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 2.9
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 3.9
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 5.1
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 25 9.0
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 9.0
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 109 bits (263), Expect = 2e-25
Identities = 53/85 (62%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 GISAAVSKTAVXPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 431
G+SAAVSKTA PIERVKLL+Q Q + + RYKGI + F R E+G++S WRGN
Sbjct: 35 GVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGN 94
Query: 432 FANVIRYFPTQALNFAFKDKYKQVF 506
ANV+RYFPTQALNFAFKDK+K++F
Sbjct: 95 TANVLRYFPTQALNFAFKDKFKKMF 119
Score = 32.7 bits (71), Expect = 0.034
Identities = 21/89 (23%), Positives = 38/89 (42%)
Frame = +3
Query: 243 LPGWGISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 422
L G + A S V ++ + L S + ++++ G+VD + + + GL +
Sbjct: 136 LASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLY 195
Query: 423 RGNFANVIRYFPTQALNFAFKDKYKQVFL 509
RG +V+ + L F D K V L
Sbjct: 196 RGFGPSVVGIVVYRGLYFGMYDTLKPVVL 224
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 62.9 bits (146), Expect = 3e-11
Identities = 32/82 (39%), Positives = 50/82 (60%)
Frame = +3
Query: 255 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 434
G++A VS+TAV P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN
Sbjct: 28 GVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNG 80
Query: 435 ANVIRYFPTQALNFAFKDKYKQ 500
N +R FP A+ FA + KQ
Sbjct: 81 TNCLRAFPYGAVQFATFNMLKQ 102
Score = 34.7 bits (76), Expect = 0.008
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +3
Query: 255 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 434
G + + +T P + ++ QV + YK I A I K +G+ F+RG
Sbjct: 234 GFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYS 290
Query: 435 ANVIRYFPTQALNF 476
+N+++ P ++ +
Sbjct: 291 SNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 50.0 bits (114), Expect = 2e-07
Identities = 29/93 (31%), Positives = 50/93 (53%)
Frame = +3
Query: 231 VR*GLPGWGISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 410
V+ G+ G G + V+K+ V P++RVK+L Q H S + A R+ G+ A I GL
Sbjct: 18 VKSGIAG-GTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGL 75
Query: 411 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 509
++G+ A + R FP + F ++ ++V +
Sbjct: 76 HGLYQGHTATLYRVFPYAGIKFVAYEQVRRVLI 108
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 39.9 bits (89), Expect = 2e-04
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +3
Query: 258 ISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 437
+S + T V P+ ++ LQ Q S A Y G +D F + K +G ++G
Sbjct: 344 LSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSP 400
Query: 438 NVIRYFPTQALNFAFKDKYKQ 500
N+++ P+ A+++ + K+
Sbjct: 401 NLLKVAPSVAISYLVYENCKK 421
Score = 30.7 bits (66), Expect = 0.14
Identities = 18/89 (20%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Frame = +3
Query: 255 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGN 431
G++ +V++ + P++ +K +Q +S+ Q K I+ + + + K G+ ++RG
Sbjct: 236 GMAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGV 291
Query: 432 FANVIRYFPTQALNFAFKDKYKQVFLAAL 518
++ FP A + + K+ ++ L
Sbjct: 292 LVGILGMFPYSATDLGTFEGLKRTWIGIL 320
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 38.3 bits (85), Expect = 7e-04
Identities = 23/85 (27%), Positives = 45/85 (52%)
Frame = +3
Query: 255 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 434
G+S A++ + P++ VK LLQ + S I ++ KG +D I G+ SF++G
Sbjct: 212 GLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIPSFFKGIR 270
Query: 435 ANVIRYFPTQALNFAFKDKYKQVFL 509
++ P A+++A + K++ +
Sbjct: 271 PRMVVAMPATAVSWAAYEAGKEILI 295
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 33.5 bits (73), Expect = 0.019
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 GISAAVSKT-AVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 431
G A +S+ + P++ VK +Q+ V K Y G D +I K +G +RG
Sbjct: 15 GAVAGISEVLTLYPLDVVKTRMQLS-VGKS-----DYNGTFDCLKKIVKNEGPHRLYRGI 68
Query: 432 FANVIRYFPTQALNFAFKDKYKQVF 506
++ P +AL FA D Y +++
Sbjct: 69 LPPILMEAPKRALKFASNDTYSKLW 93
Score = 31.9 bits (69), Expect = 0.059
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +3
Query: 255 GISAAVSKT-AVXPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 428
G A ++T V P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G
Sbjct: 111 GSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNG 163
Query: 429 NFANVIRYFPTQALNFAFKDKYK 497
A + R+ A F K +
Sbjct: 164 FEATMWRHVVWNAGYFGVIQKIR 186
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 32.7 bits (71), Expect = 0.034
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +3
Query: 243 LPGWGISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 422
L G GI+ ++ P E V+ L+ S I +Y G++ F + EQG++ +
Sbjct: 276 LGGAGIAKFMAAGIAYPHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLY 332
Query: 423 RGNFANVIRYFPTQALNF 476
G A+++R P + F
Sbjct: 333 GGLTAHLLRVVPNACILF 350
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 31.5 bits (68), Expect = 0.078
Identities = 18/82 (21%), Positives = 36/82 (43%)
Frame = +3
Query: 258 ISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 437
++ ++ PI+ VK +Q ++A + YK + +I + GLL FW G
Sbjct: 212 VAGIITVYCTQPIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATP 265
Query: 438 NVIRYFPTQALNFAFKDKYKQV 503
+ R + + F +K ++
Sbjct: 266 RLARLILSGGIVFTVYEKVMEI 287
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 28.7 bits (61), Expect = 0.55
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 345 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 443
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Frame = +3
Query: 255 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWR 425
G + S V P++ VK Q Q + G + + I +G+ +R
Sbjct: 13 GAAGLASSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYR 72
Query: 426 GNFANVIRYFPTQALNFAFKDKYKQVF 506
G ++ Y P+ ++ F +K K +F
Sbjct: 73 GVGPMMLGYLPSWSIYFVVYEKCKVLF 99
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 27.9 bits (59), Expect = 0.96
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 243 LPGWGISAAVSKTA----VXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 410
+P + +S A+S A V P+E V++ LQ+Q K + Y G D +I + GL
Sbjct: 112 MPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQYGL 166
Query: 411 LSFWRG 428
+G
Sbjct: 167 SGIMKG 172
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 27.9 bits (59), Expect = 0.96
Identities = 18/83 (21%), Positives = 35/83 (42%)
Frame = +3
Query: 255 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 434
GIS+ + + + P + +K+ +Q+ S + F +++G+ + WRGN
Sbjct: 24 GISSVICRFMIAPFDVIKIRMQITQSSLR-----------PVFKETVQKEGVRALWRGNV 72
Query: 435 ANVIRYFPTQALNFAFKDKYKQV 503
+ Y A F K K +
Sbjct: 73 VAELLYLVYGAAEFVAFSKLKHL 95
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +3
Query: 258 ISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 437
I+ A SK + P++ V LQ YK D F+ I + G+ +RG
Sbjct: 201 IAGAGSKAIMFPVDTVVKTLQT--------FPSNYKSFKDCFLSIYRNSGIKGLYRGLSV 252
Query: 438 NVIRYFP 458
++++ P
Sbjct: 253 SMLKVAP 259
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 81 YEITPNLLFKNQELVFRDPPSACAATPTSTY 173
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 385 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGXTAV 278
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 5.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 369 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 461
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 93 PNLLFKNQELVFRDPPSACAATPT 164
P + K E + RDPP A PT
Sbjct: 4 PKRIIKEIETLTRDPPPGIVAAPT 27
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 61 TLC--APVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHIHLV 183
T+C AP + L ++C+K+ C + PR PR+ HL+
Sbjct: 551 TICNIAPFVENLSFVTCAKLMQLCSSLSSPRFLFRNPRN-HLL 592
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,353
Number of Sequences: 5004
Number of extensions: 37657
Number of successful extensions: 116
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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