Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0004
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   157   8e-41
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   157   8e-41
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   7.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   7.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  157 bits (380), Expect = 8e-41
 Identities = 70/88 (79%), Positives = 80/88 (90%)
 Frame = +3

Query: 255 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 434
           G++AA+SKT V PIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN 
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNL 77

Query: 435 ANVIRYFPTQALNFAFKDKYKQVFLAAL 518
           ANVIRYFPTQALNFAFKDKYKQVFL  +
Sbjct: 78  ANVIRYFPTQALNFAFKDKYKQVFLGGV 105



 Score = 35.9 bits (79), Expect = 2e-04
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +1

Query: 205 MSNLADPVAFAKDFLAG 255
           MS LADPVAFAKDFLAG
Sbjct: 1   MSGLADPVAFAKDFLAG 17



 Score = 32.3 bits (70), Expect = 0.003
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = +3

Query: 243 LPGWGISAAVSKTA---VXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLL 413
           L  WGI+  V+  A     P + V+  + +Q  S +  ++  YK  +  +  I K +G  
Sbjct: 213 LISWGIAQVVTTVAGIVSYPFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGN 270

Query: 414 SFWRGNFANVIR 449
           +F++G F+N++R
Sbjct: 271 AFFKGAFSNILR 282



 Score = 25.0 bits (52), Expect = 0.47
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = +3

Query: 243 LPGWGISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 422
           L   G + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+   +
Sbjct: 119 LASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLY 176

Query: 423 RGNFANVIRYFPTQALNFAFKD 488
           RG   +V      +A  F F D
Sbjct: 177 RGFGVSVQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  157 bits (380), Expect = 8e-41
 Identities = 70/88 (79%), Positives = 80/88 (90%)
 Frame = +3

Query: 255 GISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 434
           G++AA+SKT V PIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN 
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNL 77

Query: 435 ANVIRYFPTQALNFAFKDKYKQVFLAAL 518
           ANVIRYFPTQALNFAFKDKYKQVFL  +
Sbjct: 78  ANVIRYFPTQALNFAFKDKYKQVFLGGV 105



 Score = 35.9 bits (79), Expect = 2e-04
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +1

Query: 205 MSNLADPVAFAKDFLAG 255
           MS LADPVAFAKDFLAG
Sbjct: 1   MSGLADPVAFAKDFLAG 17



 Score = 32.3 bits (70), Expect = 0.003
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = +3

Query: 243 LPGWGISAAVSKTA---VXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLL 413
           L  WGI+  V+  A     P + V+  + +Q  S +  ++  YK  +  +  I K +G  
Sbjct: 213 LISWGIAQVVTTVAGIVSYPFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGN 270

Query: 414 SFWRGNFANVIR 449
           +F++G F+N++R
Sbjct: 271 AFFKGAFSNILR 282



 Score = 25.0 bits (52), Expect = 0.47
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = +3

Query: 243 LPGWGISAAVSKTAVXPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 422
           L   G + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+   +
Sbjct: 119 LASGGAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLY 176

Query: 423 RGNFANVIRYFPTQALNFAFKD 488
           RG   +V      +A  F F D
Sbjct: 177 RGFGVSVQGIIIYRAAYFGFYD 198


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 405 PAPWGCARRRRR 370
           P P GC RRR R
Sbjct: 1   PGPNGCPRRRGR 12


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 130 VIPHPRVPQLPPRHIHLVKIT 192
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,474
Number of Sequences: 438
Number of extensions: 2685
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)