Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0003
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    27   1.3  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    26   2.9  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   5.1  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    22   6.6  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    25   6.7  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   6.7  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   8.9  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   8.9  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    25   8.9  

>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 373 PPTRAGKPSWEPTQREGSIGATTH*DVECKVF 278
           P T   +P W    ++GSI    + D +C VF
Sbjct: 139 PKTWKRQPGWTKYAKDGSISCVPYPDSDCMVF 170


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 234 QQSREKEKKCFITRSRSIFKSADQNTK*V*FSGNIVQIQKANTVCNHCNS 85
           Q  +EKEKK       S  +  +Q T  +  +GN+      NT   H NS
Sbjct: 181 QDIQEKEKKYLEEMEASYQEQRNQTTDDIWSAGNLNHKPTLNTSSTHSNS 230


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
 Frame = -2

Query: 389 ELGTGPPHKGRKA--QLGANTEGRKHRSHDTLRCRMQSLHGT*QFSKAFISCTTSSLVKR 216
           EL  G       A  QL    E  + R+H  +R   Q ++   +   A  + T  S    
Sbjct: 405 ELSMGSNQNSNSAMDQLAKVNERNRRRNHTEIRLAEQRMNEERRRLSAAATATPMSAPTS 464

Query: 215 RRNVSSPGADPSLK---VLTKTLNRSDSVEI 132
               +SP   PSL    + T  LN S+SV +
Sbjct: 465 VLTGTSPQPSPSLSTSIMSTPKLNPSESVVV 495


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 21.8 bits (44), Expect(2) = 6.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 155 LVFWSALLKMDLLLVMKHFFSFSRDCWL 238
           ++ W A    + L   KH FS S  CWL
Sbjct: 279 VILWDAFTG-EKLRDYKHGFSVSCCCWL 305



 Score = 21.4 bits (43), Expect(2) = 6.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 335 CWLPAGLS 358
           CWLP GLS
Sbjct: 303 CWLPDGLS 310


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 197

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 292 LHLNVSWLLCFLPSVLAPSWAFLPLWG 372
           LH N+  LL  L +VLA S  F   WG
Sbjct: 80  LHPNIYSLLRLLIAVLAVSVVFFTAWG 106


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 342 SQLGFPALVGGPGTQFAL**VVLQFTGRRF 431
           S +G+ +LVG P T+ AL   +LQ  G  F
Sbjct: 144 SSIGYVSLVGKPKTEIALLAKILQDKGAIF 173


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/50 (28%), Positives = 19/50 (38%)
 Frame = -3

Query: 451 FPSHDVVKRRPVNCNTTHYRANWVPGPPTRAGKPSWEPTQREGSIGATTH 302
           FPS +  K +    N T  +  W+ G PT+  K  W      G      H
Sbjct: 300 FPSENANKTQINIENATCSKMTWIMGSPTKE-KSQWGSVSTTGVSNQQNH 348


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 309 VAPMLPSLCVGSQLGFPALVG 371
           + P +PS C+ +    PALVG
Sbjct: 621 IVPDVPSPCISTNPNLPALVG 641


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 466 G*RQGFPSHDVVKRRPVNCNTTHYRANWVPGPPTRAGKPSWEPT 335
           G R GFPS ++ + RP      + + +  P    +AG  S E T
Sbjct: 316 GNRPGFPSLNIPRTRPTTAGIANTQFDLEPYRNRQAGSISSEGT 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,133
Number of Sequences: 5004
Number of extensions: 47795
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)