Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0003
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0036 + 3217163-3217584,3217752-3218322                           30   0.96 
02_01_0703 + 5251901-5251950,5252783-5253554                           29   2.2  
06_03_0400 - 20420257-20421837                                         27   6.8  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    27   6.8  
03_01_0343 - 2699518-2700114                                           27   6.8  
12_02_0298 + 17041206-17041712                                         27   8.9  
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371     27   8.9  

>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 407 ITIHWPSFYNVV-TGKTLALPNLIALQH 487
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>02_01_0703 + 5251901-5251950,5252783-5253554
          Length = 273

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 411 VIRLTIGRIGYRAPPQGQESPAGSQHRG 328
           ++R  I  IG  APPQG++ P G  HRG
Sbjct: 206 MVRELIVSIGGGAPPQGKK-PVGGSHRG 232


>06_03_0400 - 20420257-20421837
          Length = 526

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 158 LNRSDSVEILCKYKKQILSVTIATASWCFIY 66
           LNR+ S+    KYK   ++  ++ A+W  IY
Sbjct: 352 LNRTSSIRAFGKYKSDYVTQPLSKATWDTIY 382


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 419 WPSFYNVV-TGKTLALPNLIALQH 487
           W  F N+V +G TL+LP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


>03_01_0343 - 2699518-2700114
          Length = 198

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 436 VVKRRPVNCNTTHYRANWVPGPPTRAGKPSWEPTQREGSIGATTH 302
           +V R  V+C   H    + P PPT A  P   P     S  AT++
Sbjct: 71  MVSRDDVDCYNQHRYLEYSPPPPTPAPPPVTSPPM-SSSFAATSY 114


>12_02_0298 + 17041206-17041712
          Length = 168

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 412 CNTTHYRANWV-PGPPTRAGKPSWEPTQREGS 320
           C   H RA W  P PP  A   S +PT+  G+
Sbjct: 120 CCWCHCRACWTEPSPPNSAWSKSGKPTEAGGA 151


>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
          Length = 680

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 419 WPSFYNVV-TGKTLALPNLIALQH 487
           W  F N+V +G TL+LP  + LQH
Sbjct: 414 WSRFTNLVQSGLTLSLPEYVLLQH 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,020,783
Number of Sequences: 37544
Number of extensions: 350594
Number of successful extensions: 1030
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)