Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0003
         (516 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    25   2.0  
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    24   2.6  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   4.6  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   6.1  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    23   6.1  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   8.1  

>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 261 KLSRAMKTLHSTSQCVVAPMLPSLCV 338
           ++ RA KT+   + CV+A M+P +C+
Sbjct: 792 RVVRAYKTISHVAVCVIASMVP-ICL 816


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 35  YLYSLIFPLQCK*NTS*LLQWLQ-TVFAFCICTIFPLNQTYLVFWSALLKMDL 190
           YL+SL    Q +     LLQ    +VF        P NQ  + FW A LK +L
Sbjct: 51  YLFSLGLQQQQQQQQQQLLQQHPPSVFPHAALPHTPTNQPIVPFWQADLKPEL 103


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 261 KLSRAMKTLHSTSQCVVAPMLPSLCV 338
           +++ A +T+   + CV+A M+P LC+
Sbjct: 853 RVTSAYRTISYEAVCVIASMMP-LCI 877


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 394 RANWVPGPPTRAGKP 350
           R N VPGP + AG+P
Sbjct: 8   RPNDVPGPESSAGEP 22


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 373 PPTRAGKPSWEPTQREGSIGATTH 302
           PP   G+    P +R  S G +TH
Sbjct: 123 PPFAVGRSGTLPERRRHSFGTSTH 146


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 368  HKGRKAQLGANTEGRKHRSHDTLRCRMQSLHGT 270
            H G  A + A  +G KH ++D L  R+  +  T
Sbjct: 2521 HDGDGAVIQAQHKGIKHMAYDKLLQRVSEIEMT 2553


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,397
Number of Sequences: 2352
Number of extensions: 13116
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46937349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)