Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0003
         (516 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X68309-2|CAA48386.1|  802|Drosophila melanogaster ERCC3 protein.       28   8.6  
S50517-1|AAA12421.1|  802|Drosophila melanogaster ERCC3Dm protein.     28   8.6  
BT025199-1|ABF17890.1|  798|Drosophila melanogaster FI01118p pro...    28   8.6  
AY051975-1|AAK93399.1|  798|Drosophila melanogaster LD44022p pro...    28   8.6  
AE014296-1828|AAF50150.1|  798|Drosophila melanogaster CG8019-PA...    28   8.6  

>X68309-2|CAA48386.1|  802|Drosophila melanogaster ERCC3 protein.
          Length = 802

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 377 GPPHKGRKAQLGANTEGRKHRSHD 306
           GPP K RK + G +  G+K R+ D
Sbjct: 2   GPPKKSRKDRSGGDKFGKKRRAED 25


>S50517-1|AAA12421.1|  802|Drosophila melanogaster ERCC3Dm protein.
          Length = 802

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 377 GPPHKGRKAQLGANTEGRKHRSHD 306
           GPP K RK + G +  G+K R+ D
Sbjct: 2   GPPKKSRKDRSGGDKFGKKRRAED 25


>BT025199-1|ABF17890.1|  798|Drosophila melanogaster FI01118p
           protein.
          Length = 798

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 377 GPPHKGRKAQLGANTEGRKHRSHD 306
           GPP K RK + G +  G+K R+ D
Sbjct: 2   GPPKKSRKDRSGGDKFGKKRRAED 25


>AY051975-1|AAK93399.1|  798|Drosophila melanogaster LD44022p
           protein.
          Length = 798

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 377 GPPHKGRKAQLGANTEGRKHRSHD 306
           GPP K RK + G +  G+K R+ D
Sbjct: 2   GPPKKSRKDRSGGDKFGKKRRAED 25


>AE014296-1828|AAF50150.1|  798|Drosophila melanogaster CG8019-PA
           protein.
          Length = 798

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 377 GPPHKGRKAQLGANTEGRKHRSHD 306
           GPP K RK + G +  G+K R+ D
Sbjct: 2   GPPKKSRKDRSGGDKFGKKRRAED 25


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,887,773
Number of Sequences: 53049
Number of extensions: 566720
Number of successful extensions: 1564
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1887744768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)