Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0003
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.3  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   7.5  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   7.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   7.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.5  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   10.0 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   10.0 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   10.0 

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 445 SHDVVKRRPVNCNTTHYRANWVPGP 371
           S +  K++P +C+T  YR   V  P
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTP 584



 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 3   DCRD*ALRNRDTSTPLYFPS 62
           DC     RN + +TPL+ P+
Sbjct: 570 DCDTLEYRNGEVTTPLFTPA 589


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 89  LQWLQTVFAFCIC 127
           ++ +  +FAFCIC
Sbjct: 1   MKTIVVIFAFCIC 13


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 89  LQWLQTVFAFCIC 127
           ++ +  +FAFCIC
Sbjct: 1   MKTIVVIFAFCIC 13


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 263 FSKAFISCTTSSLVKRRRNVSSPGADPSLKVLTKTLNRSDSVEI 132
           F  AF S       KRR N    G+D S   +    + S S+++
Sbjct: 69  FRFAFKSIICKCFCKRRTNTLRRGSDGSQLAMRNDRSPSYSMQV 112


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 263 FSKAFISCTTSSLVKRRRNVSSPGADPSLKVLTKTLNRSDSVEI 132
           F  AF S       KRR N    G+D S   +    + S S+++
Sbjct: 517 FRFAFKSIICKCFCKRRTNTLRRGSDGSQLAMRNDRSPSYSMQV 560


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 422 PSFYNVVTGKTLALPNLIALQHIPLSPAG 508
           P +YN++  + + +P  I   + P  P G
Sbjct: 333 PLYYNIINIEQIPVPVPIYCGNFPPRPMG 361


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 54  FPSSVNETPASCCNGYRQYL 113
           + S+  E     C GY+QYL
Sbjct: 156 YQSNGEEVCLENCTGYQQYL 175


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 84  SCCNGYRQYLLFVF 125
           SC  G  +YLLF+F
Sbjct: 2   SCGMGMIKYLLFIF 15


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,059
Number of Sequences: 438
Number of extensions: 3588
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)