Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0003
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1...    31   0.61 
At3g15780.1 68416.m01998 expressed protein                             29   1.4  
At4g14650.1 68417.m02253 expressed protein                             29   2.5  
At1g01760.1 68414.m00095 adenosine-deaminase family / editase fa...    28   3.2  
At3g22820.1 68416.m02876 allergen-related weak similarity to pol...    28   4.3  
At1g27020.1 68414.m03294 expressed protein                             28   4.3  
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin...    27   7.5  
At3g54430.1 68416.m06021 lateral root primordium (LRP) protein-r...    27   7.5  
At2g29610.1 68415.m03597 F-box family protein contains Pfam prof...    27   9.9  

>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
           (KTN1) [Arabidopsis thaliana] GI:14133602
          Length = 523

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
 Frame = -3

Query: 448 PSHDVVKRRPVNCNTTHYRAN-----WVPGPPTRAGKPSWEPTQREGSIGATT 305
           P+ DV  RRP     T  R +     W  GP TR G     P  R G  GAT+
Sbjct: 127 PTRDVTSRRPARAGQTGTRKSPQDGAWARGPTTRTG-----PASRGGRGGATS 174


>At3g15780.1 68416.m01998 expressed protein
          Length = 117

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 379 PGPPTRAGKPSWEPTQREGSIGATTH*DVECKVFMA 272
           P PP     P  + TQ EG +GA T      K+F+A
Sbjct: 53  PSPPGPDPPPPEDTTQLEGLVGAVTRVQDRVKIFLA 88


>At4g14650.1 68417.m02253 expressed protein
          Length = 644

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/79 (24%), Positives = 33/79 (41%)
 Frame = -2

Query: 248 ISCTTSSLVKRRRNVSSPGADPSLKVLTKTLNRSDSVEILCKYKKQILSVTIATASWCFI 69
           I     S  + R  + +P  D  L++  +     ++  +LC+ K +I   TI       +
Sbjct: 515 IEAIIESSKEARFEMPAPSFDHGLRIEERRDESVENTPVLCEDKTEIYEATIDVEEKTVM 574

Query: 68  YTGGEI*GSRGISVSQGSI 12
               E   SRG  +S GS+
Sbjct: 575 LKRSESVKSRGSEMSLGSL 593


>At1g01760.1 68414.m00095 adenosine-deaminase family / editase
           family similar to double-stranded RNA-specific editase
           GB:AAF69673 GI:7770275 from [Danio rerio]
          Length = 325

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 286 CILHLNVSWLLCFLPSVLAPS 348
           C+LHL +S L C LPS+L  S
Sbjct: 119 CLLHLYISQLPCNLPSILDDS 139


>At3g22820.1 68416.m02876 allergen-related weak similarity to pollen
           major allergen 2 protein [Juniperus ashei]
           gi|9955725|emb|CAC05582
          Length = 107

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 329 PLCWLPAGLSCPCGGARYPIRPIVSRITIHWPSFYNVVTGKTLALP 466
           P+C L  G   PC     PI+P +     ++P  +    G  L +P
Sbjct: 62  PMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLFMP 107


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 445 WENPGVTQLNRLAAHPPFASWLI 513
           WE P  T  N+LA    FA+W +
Sbjct: 163 WEKPTSTDFNQLAKESEFAAWTL 185


>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
           (CCCH type) family protein contains Pfam domains
           PF00013: KH domain and PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 240

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 411 VIRLTIGRIGYRAPPQGQESPAGSQHRG 328
           ++R  IGR+G    PQG   P G  H G
Sbjct: 176 MVRELIGRLGSVKKPQGIGGPEGKPHPG 203


>At3g54430.1 68416.m06021 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 183

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 430 KRRPVNCNTTHYRANWVPGPPTRAGKPSWEPTQRE 326
           K R  NC  TH ++ W+P   TR+   S  P++R+
Sbjct: 62  KSRGYNC-VTHVKSTWIPSSATRS---SSSPSERK 92


>At2g29610.1 68415.m03597 F-box family protein contains Pfam profile
           PF00646: F-box domain
          Length = 328

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 246 YESL*KLSRAMKTLHSTSQCVVAPMLPSLCVGSQLGFPALVGGP 377
           +ES  + S  M+  HS S CVV  +L +L +   L  P +V  P
Sbjct: 194 WESWGEESELMRFWHSVSSCVVGDLLYALDLTCALEHPIVVYYP 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,455,174
Number of Sequences: 28952
Number of extensions: 265428
Number of successful extensions: 667
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)