Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--1000.Seq
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    24   2.4  
AL032639-3|CAA21635.1|  283|Caenorhabditis elegans Hypothetical ...    29   2.5  
U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    28   5.8  
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    28   5.8  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    28   5.8  
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      28   5.8  

>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 24.2 bits (50), Expect(2) = 2.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 107 SASTNGGTHFCTFTRIFTVAAFFCYCTNTSANSC 208
           S STN     C+ + + + ++  C  +++ ANSC
Sbjct: 6   STSTNISNRVCSCSPLPSTSSCGCQASSSCANSC 39



 Score = 23.8 bits (49), Expect(2) = 2.4
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 182 CTNTSANSCTFQYAINTIASK*TNAAPSNAPFVVRFISAIAGVEQNNAEIS 334
           C NT  N+C  Q+A  + +S        N P V+R ++  + +   N++ S
Sbjct: 59  CQNTCVNACNKQFAPTSSSS---IVQIKNQPSVIRAVAGKSCLSGCNSQCS 106


>AL032639-3|CAA21635.1|  283|Caenorhabditis elegans Hypothetical
           protein Y38F1A.2 protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 553 IKILSINELFLI*DYLIHVKNIIPIITATLILNYLNNSERSLVKQILIEDEIIVCATY-L 377
           I+I   N  F I   ++     IPI+   LI N+ NN   +LV Q+ I    I   TY L
Sbjct: 178 IRIDDYNRRFSINRPVLDYIRDIPILIPYLIRNFFNNDIFTLVYQVRIGFVFICVITYFL 237

Query: 376 IPDI*VEE 353
           +P   V E
Sbjct: 238 LPSDMVPE 245


>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 28  YPELHHPYRQSRHL*SPLRGHCRSERQCQHQRRH 129
           YP+ HHP+ Q  H   P      + +Q  HQ  H
Sbjct: 409 YPDFHHPFNQQPHQ-PPQLSQNHTSQQGSHQPGH 441


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 28  YPELHHPYRQSRHL*SPLRGHCRSERQCQHQRRH 129
           YP+ HHP+ Q  H   P      + +Q  HQ  H
Sbjct: 505 YPDFHHPFNQQPHQ-PPQLSQNHTSQQGSHQPGH 537


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 28  YPELHHPYRQSRHL*SPLRGHCRSERQCQHQRRH 129
           YP+ HHP+ Q  H   P      + +Q  HQ  H
Sbjct: 477 YPDFHHPFNQQPHQ-PPQLSQNHTSQQGSHQPGH 509


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 28  YPELHHPYRQSRHL*SPLRGHCRSERQCQHQRRH 129
           YP+ HHP+ Q  H   P      + +Q  HQ  H
Sbjct: 409 YPDFHHPFNQQPHQ-PPQLSQNHTSQQGSHQPGH 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,367,762
Number of Sequences: 27780
Number of extensions: 234718
Number of successful extensions: 711
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)