Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0999.Seq
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    28   1.5  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   8.0  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 487 GSLHSEFTENPSWLPKQHGLSFHF 416
           GS+HS   E+P+ L +QH  SF F
Sbjct: 48  GSVHSPILESPTSLNRQHRNSFSF 71


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/69 (21%), Positives = 30/69 (43%)
 Frame = +3

Query: 480 SEPASPIPVDSFYR*HDRPRCISRESSWFQHFISFNEHYQRRNVVTHNTTRLLRGVSW*Y 659
           ++P     +++ Y+    P+  + E S      + N++YQ RNV       +L  +    
Sbjct: 125 TKPLVTQQMEACYKITGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIKHGI 184

Query: 660 CASNSVNCL 686
           C    ++CL
Sbjct: 185 CDRTRISCL 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,446
Number of Sequences: 5004
Number of extensions: 53505
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)