Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0997.Seq
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.21 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
 Frame = +2

Query: 359 PDPHRDGR-HGRQEERL---HHRCHKQTGHHRPGHPASRPSGPA 478
           P PH     HG         HH  H  T HH+   P +  S PA
Sbjct: 412 PGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPA 455


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 395 EERLHHRCHKQTGHHRP 445
           E ++HH+ H Q  H +P
Sbjct: 165 ESQMHHQMHTQHPHMQP 181


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/29 (24%), Positives = 11/29 (37%)
 Frame = +2

Query: 353 HQPDPHRDGRHGRQEERLHHRCHKQTGHH 439
           H    H   RH  + +  ++  H    HH
Sbjct: 424 HYNHNHNQARHSSKSDNQNNNQHNDQAHH 452


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
          protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 52 DVRPDTARVLGVRRFTP 2
          D++PDTA ++    F+P
Sbjct: 49 DMKPDTASLINPGNFSP 65


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
          protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 52 DVRPDTARVLGVRRFTP 2
          D++PDTA ++    F+P
Sbjct: 49 DMKPDTASLINPGNFSP 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,468
Number of Sequences: 438
Number of extensions: 3182
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)