Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0996X.Seq
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50301-11|AAB37048.1|  269|Caenorhabditis elegans Hypothetical p...    28   1.6  
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    27   2.8  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    27   3.8  
AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical ...    27   3.8  
AL117203-6|CAB60419.1|  234|Caenorhabditis elegans Hypothetical ...    27   3.8  
Z72505-3|CAA96610.1|  340|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical pr...    27   5.0  
M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein ( C.ele...    27   5.0  
AC025715-5|AAP13755.1|  281|Caenorhabditis elegans Hypothetical ...    26   6.6  
U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AL032633-2|CAA21595.2|  428|Caenorhabditis elegans Hypothetical ...    26   8.7  
AF077529-5|AAN60534.1|  756|Caenorhabditis elegans Hypothetical ...    26   8.7  
AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical ...    26   8.7  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    26   8.7  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    26   8.7  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    26   8.7  

>U50301-11|AAB37048.1|  269|Caenorhabditis elegans Hypothetical
           protein F20D6.1 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 2   NNELRKRASSSLGFQPNNGYVKYKTV 79
           N  +RK+ SS    +PN GY+ YK V
Sbjct: 56  NAAIRKKGSSDKSVKPNVGYMYYKLV 81


>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
            protein Y79H2A.3a protein.
          Length = 2129

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 326  PDGVPP-SAAAEGGGRPTSYQHYPGPGAESDQP 231
            P  +PP SAAA   G P ++   P P  + + P
Sbjct: 1249 PPAIPPQSAAAAAAGYPMTFTSRPPPPVQQEMP 1281


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 326 PDGVPPSAAAEGGGRPTSY 270
           P G PPS ++EG G P S+
Sbjct: 571 PSGPPPSESSEGSGIPPSF 589


>AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical
           protein Y56A3A.4 protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = -3

Query: 331 QSRTGCPPAQQQK----GVVGRPATSIILVLEPNQINHSAPQRPTMQRMARA-SPNVNTV 167
           Q R G PP QQQ+      +G P         PN  +    QRP    MA+   P+ + +
Sbjct: 86  QMRAGPPPPQQQQQQHFQQMGIPQQQQPQQFTPNGQSMQMQQRPMQMGMAQGPGPSGHLM 145

Query: 166 GAVG 155
           G VG
Sbjct: 146 GMVG 149


>AL117203-6|CAB60419.1|  234|Caenorhabditis elegans Hypothetical
           protein Y48C3A.9 protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 280 GRPPPSAAALGGTPSGFAPYSP 345
           GR PP A A GG P G  P  P
Sbjct: 141 GRMPPGAMAPGGMPPGAFPMFP 162


>Z72505-3|CAA96610.1|  340|Caenorhabditis elegans Hypothetical
           protein C50C10.4 protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 102 ETTLCPHLTVLYLTYPLFGWKPSEEDALFRSSLF 1
           ET + P   VLYLT+P+FG K  +      SS+F
Sbjct: 296 ETVMMPW--VLYLTHPMFGPKKQQLKPSGASSVF 327


>Z66499-3|CAA91300.1|  348|Caenorhabditis elegans Hypothetical
           protein T01B7.7 protein.
          Length = 348

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -2

Query: 326 PDGVPPSAAAEGGGRPTSYQHYPGPGAESDQP 231
           P G P  A  EG   PT    YPG      +P
Sbjct: 265 PRGPPGEAGPEGPQGPTGRDAYPGQSGPQGEP 296


>M34451-1|AAA28143.1|  348|Caenorhabditis elegans protein (
           C.elegans collagen (rol-6) gene, complete cds. ).
          Length = 348

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = -2

Query: 326 PDGVPPSAAAEGGGRPTSYQHYPGPGAESDQP 231
           P G P  A  EG   PT    YPG      +P
Sbjct: 265 PRGPPGEAGPEGPQGPTGRDAYPGQSGPQGEP 296


>AC025715-5|AAP13755.1|  281|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.3 protein.
          Length = 281

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 340 SKVQSRTGCPPAQQQKGVVGRPATSIILVLEPNQINH 230
           S +  R   PP  +   V   P TS++ V+EP  I H
Sbjct: 24  SSIPGRQAPPPHTEPSTV---PTTSVVAVMEPKVIEH 57


>U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical
           protein T19A5.3a protein.
          Length = 715

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +1

Query: 280 GRPPPS--AAALGGTPSGFAPYS 342
           G PPP   A  LGG  +G +PYS
Sbjct: 564 GAPPPPVPAVGLGGAAAGKSPYS 586


>AL032633-2|CAA21595.2|  428|Caenorhabditis elegans Hypothetical
           protein Y106G6A.2a protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 320 GVP-PSAAAEGGGRPTSYQHYPGPG 249
           GVP P  +A+G G PT + H P PG
Sbjct: 28  GVPIPGISADGIGSPTDHAHTP-PG 51


>AF077529-5|AAN60534.1|  756|Caenorhabditis elegans Hypothetical
           protein C09E8.1b protein.
          Length = 756

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 96  TLCPHLTVLYLTYPLFGWKPSEEDALFRSSL 4
           T    LTV  L + ++GW+  E+D +  S +
Sbjct: 437 TALVQLTVFILIFFVYGWQKLEQDVMMTSQI 467


>AF077529-4|AAC26255.2|  783|Caenorhabditis elegans Hypothetical
           protein C09E8.1a protein.
          Length = 783

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 96  TLCPHLTVLYLTYPLFGWKPSEEDALFRSSL 4
           T    LTV  L + ++GW+  E+D +  S +
Sbjct: 437 TALVQLTVFILIFFVYGWQKLEQDVMMTSQI 467


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 19/76 (25%), Positives = 23/76 (30%)
 Frame = -2

Query: 335 GAKPDGVPPSAAAEGGGRPTSYQHYPGPGAESDQPFXXXXXXXXXXXXGITEREHRGRGG 156
           G+ P G PP+     G  PT       P  +  Q                T R HRG  G
Sbjct: 414 GSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPG 473

Query: 155 LRATXSCPSGPHAHGR 108
              +     GP    R
Sbjct: 474 KSESSESREGPRGPRR 489


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 19/76 (25%), Positives = 23/76 (30%)
 Frame = -2

Query: 335 GAKPDGVPPSAAAEGGGRPTSYQHYPGPGAESDQPFXXXXXXXXXXXXGITEREHRGRGG 156
           G+ P G PP+     G  PT       P  +  Q                T R HRG  G
Sbjct: 435 GSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPG 494

Query: 155 LRATXSCPSGPHAHGR 108
              +     GP    R
Sbjct: 495 KSESSESREGPRGPRR 510


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 19/76 (25%), Positives = 23/76 (30%)
 Frame = -2

Query: 335 GAKPDGVPPSAAAEGGGRPTSYQHYPGPGAESDQPFXXXXXXXXXXXXGITEREHRGRGG 156
           G+ P G PP+     G  PT       P  +  Q                T R HRG  G
Sbjct: 420 GSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPG 479

Query: 155 LRATXSCPSGPHAHGR 108
              +     GP    R
Sbjct: 480 KSESSESREGPRGPRR 495


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,030,269
Number of Sequences: 27780
Number of extensions: 142632
Number of successful extensions: 546
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)