Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0996X.Seq
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   0.81 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   7.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.9  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 0.81
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +3

Query: 6   TNSEKGHLLRSASSQTMDMLNI-KPLS 83
           TN++  HL R+ASS   D+ ++ +PL+
Sbjct: 266 TNTDARHLFRTASSTPEDLQDLEEPLT 292


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 51  TMDMLNIKPLSEDIEWSP 104
           T+  +NIK   E IEW P
Sbjct: 671 TIICINIKRQKEKIEWDP 688


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 97  HSMSSLNGFIFNISIVWLEA 38
           H+MS L+  +  I ++WL A
Sbjct: 163 HTMSKLSRAVKFIIVIWLLA 182


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 57   DMLNIKPLSEDIEWSPEAP 113
            D+LN++PLS +    P  P
Sbjct: 1046 DILNLRPLSMEKGTRPMIP 1064


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,085
Number of Sequences: 438
Number of extensions: 1699
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)