Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0992.Seq
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   159   3e-41
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.1  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  159 bits (386), Expect = 3e-41
 Identities = 78/85 (91%), Positives = 81/85 (95%)
 Frame = +3

Query: 255 LVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL 434
           LVVAVLIAG L+EP  Y L+KGF+HLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL
Sbjct: 69  LVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRL 128

Query: 435 FVGMILILIFAEVLGLYGLIVAIYL 509
           FVGMILILIFAEVLGLYGLIVAIYL
Sbjct: 129 FVGMILILIFAEVLGLYGLIVAIYL 153



 Score =  126 bits (305), Expect = 2e-31
 Identities = 62/65 (95%), Positives = 64/65 (98%)
 Frame = +1

Query: 61  ENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 240
           E++PIY PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI
Sbjct: 4   EDHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGI 63

Query: 241 IAIYG 255
           IAIYG
Sbjct: 64  IAIYG 68


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 432 LFVGMI-LILIFAEVLGLYGLIVAIYLTQNKR 524
           L VG + LILIF  V G   + VAIY  +  R
Sbjct: 26  LLVGFLFLILIFLSVAGNILVCVAIYTDRGLR 57


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 59  LKIIQSTDPSLELWGRRLLSSS 124
           + I + TDP  E W RR L  S
Sbjct: 142 MTITELTDPVKEFWERRALQIS 163


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -1

Query: 267 QPRPAVDGNNTRHDDRNDRLHDQLRPHHRH 178
           Q R +   +N  ++  ND+ H   + ++RH
Sbjct: 431 QARHSSKSDNQNNNQHNDQAHHSSKSNNRH 460


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 104 RRLLSSSAPWEPPMELP 154
           R  LSSS P +PP + P
Sbjct: 811 REKLSSSQPMQPPQQNP 827


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,099
Number of Sequences: 438
Number of extensions: 5027
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)