Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0991.Seq
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    29   0.74 
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.3  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    27   3.0  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.2  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    26   6.9  

>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 294 DQINTLVTLPGVGG*NRPLAISIRWSRSV 208
           D +  L+TLPGVG     L +SI W+++V
Sbjct: 128 DTVEDLMTLPGVGPKMGYLCMSIAWNKTV 156


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -1

Query: 623 DGLYVGGSTGEAFVQSLSEREQVLEIVAEE 534
           D LY+G +T EAF++ L + E  LE ++E+
Sbjct: 184 DTLYLGPTTSEAFIERL-QNELELESISED 212


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 123 PIPPSAPASRPEAKISS 173
           PIPPS P+SRP  ++ S
Sbjct: 231 PIPPSIPSSRPPERVPS 247


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 325 NVVHHHRQTIRRINNCPIVIAVFFKAE 405
           +V +HH  T + ++NCPI   + +K E
Sbjct: 534 DVQNHHIVTKKSVSNCPITYVMVYKNE 560


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 700 LLLTNNKHWIKRVCVAWFSSIFSRASTVYTWVVRPARPLYKAFPSVNRYWKSS 542
           +L+T     +   C+A   S    A ++Y W    A P +  F S    W S+
Sbjct: 116 MLVTGFCSIVTAACLAEICSALPAAGSIYLWAAESAGPRFGRFVSFLVAWWST 168


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/72 (20%), Positives = 37/72 (51%)
 Frame = -1

Query: 683 QALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAT 504
           Q++D+  ++ + +  +    +  Y+G S GEAFV S+       E++ + +  ++   + 
Sbjct: 180 QSVDEI-MKLIGKIKVDSNGESRYIGASAGEAFVDSVQS-----ELLVDPSFSELSAYSH 233

Query: 503 SVASAPPKANNL 468
           +  S PP  +++
Sbjct: 234 THHSYPPNEHDV 245


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 283  VDLIQGQFYPTQGWNVVHHHRQTIRRINNCPIVIAV 390
            V L Q Q YP +    VHH  + I RI+  P    +
Sbjct: 991  VPLDQLQLYPEEKIVQVHHFHKDIARIHGIPFSFVI 1026


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,648
Number of Sequences: 5004
Number of extensions: 65138
Number of successful extensions: 220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)