Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0991.Seq
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0046 + 10114402-10114535,10116438-10117365 40 0.003
04_04_0873 - 28905240-28906061 33 0.19
12_02_0267 - 16588799-16588826,16589333-16590144 29 3.1
01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245 29 4.1
10_08_0318 + 16706714-16706845,16707590-16708405,16708493-167086... 29 5.4
09_01_0015 + 370242-370306,370429-370497,371087-371161,371558-37... 29 5.4
05_06_0015 + 24953918-24954359,24955622-24955857,24955945-249560... 29 5.4
01_05_0797 + 25313226-25313330,25313464-25313545,25317573-253176... 29 5.4
09_01_0140 + 2083885-2083969,2084178-2084653 28 7.2
03_02_0513 + 9035204-9035422,9035552-9036091,9036512-9036742,903... 28 7.2
01_01_0633 - 4767914-4768020,4768057-4768085,4768590-4768745,476... 28 7.2
08_01_0108 - 791835-792398 28 9.5
07_01_0045 - 357463-357921 28 9.5
06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149... 28 9.5
04_03_0284 + 13896307-13896765 28 9.5
03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672 28 9.5
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 28 9.5
>04_03_0046 + 10114402-10114535,10116438-10117365
Length = 353
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/86 (26%), Positives = 43/86 (50%)
Frame = -1
Query: 734 TNLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQV 555
T+LR V+ A+ TP+ D + L+ I G +G+ VGG+TGE + S E +
Sbjct: 52 TSLR-VITAVKTPYLPDGRFDLEAYDSLINMQIDGGAEGVIVGGTTGEGHLMSWDEHIML 110
Query: 554 LEIVAEEAKGKIKLIATSVASAPPKA 477
+ K+K++ + +++ +A
Sbjct: 111 IGHTVNCFGAKVKVVGNTGSNSTREA 136
Score = 35.5 bits (78), Expect = 0.047
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = -3
Query: 507 HVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYN 328
+ G ST E+ G A + P+Y S E H+ A++ P ++YN
Sbjct: 127 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLISHFEAVLPMG---PTIIYN 183
Query: 327 IPALSGVKL---TLDQINTLVTLPGV 259
+P+ +G + ++ +++ L GV
Sbjct: 184 VPSRTGQDIPPAVIEAVSSFTNLAGV 209
>04_04_0873 - 28905240-28906061
Length = 273
Score = 33.5 bits (73), Expect = 0.19
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = -3
Query: 507 HVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYN 328
+ G ST E+ G A + P+Y S E H+ A++ P ++YN
Sbjct: 47 NTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSVEGLISHFEAVLPMG---PTIIYN 103
Query: 327 IPALSGVKL---TLDQINTLVTLPGV 259
+P+ +G + ++ +++ + GV
Sbjct: 104 VPSRTGQDIPPAVIEAVSSFSNMAGV 129
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -1
Query: 638 IQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIATSVASAPPKA 477
I+ G +G+ VGG+TGE + S E ++ KIK++ + +++ +A
Sbjct: 3 IEGGAEGVIVGGTTGEGHLMSWDEHIMLIGHTVNCFGTKIKVVGNTGSNSTREA 56
>12_02_0267 - 16588799-16588826,16589333-16590144
Length = 279
Score = 29.5 bits (63), Expect = 3.1
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = -1
Query: 740 MATNLR-GVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSER 564
MA N+ GVM +LL ++ D A + QF+ + I L S A ++ L +
Sbjct: 1 MAVNISTGVMNSLLVKLEEVCRYDLAEFQFSTQFDFKNNIWNLKEELSCMNALLEKLPDM 60
Query: 563 EQVLEIVAEEAKGKIKLIA 507
E L I E + K++ +A
Sbjct: 61 E-ALNIQERELRNKVRELA 78
>01_05_0747 - 24857965-24858393,24858502-24860063,24860176-24860245
Length = 686
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -1
Query: 692 DQQQALDKASLRRLVQFNIQQGIDGL-YVGGSTGEAFVQSLSEREQVLEIVAEE 534
+ +Q+ +A+L RL+ Q IDG VGG +LSE+ + LE++ EE
Sbjct: 46 ESEQSSGEAALPRLLIEVPSQVIDGFDCVGGGGDATATATLSEQSKELEMLGEE 99
>10_08_0318 +
16706714-16706845,16707590-16708405,16708493-16708666,
16708809-16708934,16709084-16709185
Length = 449
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 217 QIRREHPDLVLYNGY-DEIFASGLLAGADGGIG 122
Q+ +L+ Y G+ DE+FA+ L AGA G G
Sbjct: 185 QLSSTATELMQYAGFTDEVFAAALAAGAGAGAG 217
>09_01_0015 +
370242-370306,370429-370497,371087-371161,371558-371591,
371659-373132,373193-373310,373374-373419
Length = 626
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 211 GSAPSDRDRQRSVSATYARQCNKCVDLIQGQFYP 312
G P + + SV Y +Q KC+D+ Q +F+P
Sbjct: 280 GDLPKNLAKALSVVNLYRKQELKCMDISQAEFFP 313
>05_06_0015 +
24953918-24954359,24955622-24955857,24955945-24956085,
24956188-24956619,24956847-24956948
Length = 450
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 142 GADGGIGSTYNIMGWRYQGIVKALKE 65
G DGG+G+ + + WR G V +K+
Sbjct: 118 GVDGGVGAVPDAVDWRQSGAVTKVKD 143
>01_05_0797 +
25313226-25313330,25313464-25313545,25317573-25317660,
25318298-25318331,25318399-25319243,25319278-25319371,
25319432-25319611
Length = 475
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 211 GSAPSDRDRQRSVSATYARQCNKCVDLIQGQFYP 312
G P + + SV Y +Q KC+D+ Q +F+P
Sbjct: 302 GDLPKNLAKALSVVNLYRKQELKCMDISQAEFFP 335
>09_01_0140 + 2083885-2083969,2084178-2084653
Length = 186
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 533 PLRRRFPVPVHARKGFVQRPRRSNHPRIN 619
P RR+ P P+ AR+ RRS+H R+N
Sbjct: 101 PRRRQHPAPMGARRAVTNAGRRSSH-RLN 128
>03_02_0513 +
9035204-9035422,9035552-9036091,9036512-9036742,
9036829-9036969,9037344-9037541,9037644-9037937
Length = 540
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 271 IAWRRWLKQTSGDLYQMEQIRREH-PDLVLYNGYDEIFASGLLAGADGGIGSTY 113
+A R + +G++ +M Q + H PD V + ++ + + + A+ G+G+ Y
Sbjct: 95 VALARAAAEVAGEVVRMSQTEQRHRPDFVTTHDTEDNYLAREILRAEAGLGARY 148
>01_01_0633 -
4767914-4768020,4768057-4768085,4768590-4768745,
4768835-4768983,4769106-4769638,4769900-4770068,
4770255-4770347,4770641-4770698,4771392-4771471,
4771548-4771715,4772090-4772242,4772756-4772884,
4772996-4773085,4773990-4774129,4774683-4774814,
4774916-4775087
Length = 785
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 553 WKSSPKRRKVRLNSSPRRLRQHRRKP--TTCGIG*TLWLR 440
+ SP++RK R NS R R+ RRKP T C G LR
Sbjct: 719 YSPSPRKRK-RRNSVSHRKRKSRRKPNITKCNSGIPTLLR 757
>08_01_0108 - 791835-792398
Length = 187
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 550 KSSPKRRKVRLNSSPRRLRQHRRKPTTCGIG 458
+ S +RR+ R RR R+ RR+ TCG G
Sbjct: 110 RRSWRRRRSRTRQRRRRSRRRRRRRRTCGGG 140
>07_01_0045 - 357463-357921
Length = 152
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 550 KSSPKRRKVRLNSSPRRLRQHRRKPTTCGIG 458
+ S +RR+ R RR R+ RR+ TCG G
Sbjct: 75 RRSWRRRRSRTRQRRRRSRRRRRRRRTCGGG 105
>06_01_0193 -
1491710-1491739,1492194-1492319,1492631-1492766,
1493048-1493112,1493213-1493305,1493433-1493498,
1493763-1493843,1493977-1494032,1494692-1494780,
1495340-1495425,1495531-1495647,1496109-1496254,
1496665-1496725,1496831-1496914,1497028-1497135,
1497286-1497388,1497802-1497845,1498100-1498584,
1499417-1499603,1500150-1500362,1501066-1501323
Length = 877
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 550 KSSPKRRKVRLNSSPRRLRQHRRKPTTCGIG 458
+ S +RR+ R RR R+ RR+ TCG G
Sbjct: 333 RRSWRRRRSRTRQRRRRSRRRRRRRKTCGGG 363
>04_03_0284 + 13896307-13896765
Length = 152
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 550 KSSPKRRKVRLNSSPRRLRQHRRKPTTCGIG 458
+ S +RR+ R RR R+ RR+ TCG G
Sbjct: 75 RRSWRRRRSRTRQRRRRSRRRRRRRRTCGGG 105
>03_06_0695 - 35599454-35600018,35600445-35600491,35600556-35600672
Length = 242
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 550 KSSPKRRKVRLNSSPRRLRQHRRKPTTCGIG 458
+ S +RR+ R RR R+ RR+ TCG G
Sbjct: 165 RRSWRRRRSRTRQRRRRSRRRRRRRRTCGGG 195
>02_05_0101 -
25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 550 KSSPKRRKVRLNSSPRRLRQHRRKPTTCGIG 458
+ S +RR+ R RR R+ RR+ TCG G
Sbjct: 124 RRSWRRRRSRTRQRRRRSRRRRRRRRTCGGG 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,222,694
Number of Sequences: 37544
Number of extensions: 498606
Number of successful extensions: 1541
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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