Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0991.Seq
         (773 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    25   2.0  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    25   3.4  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   4.5  
X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             23   7.9  
CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative dodecenoy...    23   7.9  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   7.9  

>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -2

Query: 259 RWLKQTSGDLYQMEQIRREH---PDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQ 89
           RW  +  G + QM  +  +H   PD+VLYN  D  F   L   A   I S   ++ W+  
Sbjct: 90  RWEPKEYGGV-QMLHVPSDHIWRPDIVLYNNADGNFEVTLATKAT--IYSE-GLVEWKPP 145

Query: 88  GIVKALKEGDIQ 53
            I K+  E D++
Sbjct: 146 AIYKSSCEIDVE 157


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -3

Query: 273 TLPGVGG*NRPLAISIRWSRSVVNILILCSITVTTKSSPLV 151
           TLP   G    L ++I  S++V ++L+   IT T+++ PL+
Sbjct: 254 TLPPDSGEKLTLGLTILVSQTVFSLLVGHVITKTSEAVPLL 294


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = -2

Query: 286 QHTCYIAWRRWLKQTSGDLYQMEQIRREH---PDLVLYNGYDEIFASGLLAGADGGIGST 116
           + T Y    +W  +  G + +M  +  +H   PD+VLYN  D  F   L   A   +  T
Sbjct: 77  EQTWYDYKLKWEPKEYGGV-EMLHVPSDHIWRPDIVLYNNADGNFEVTLATKAT--LNYT 133

Query: 115 YNIMGWRYQGIVKALKEGDIQ 53
             +  WR   I K+  E D++
Sbjct: 134 GRV-EWRPPAIYKSSCEIDVE 153


>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 295 GSDQHTCYIAWRRWLKQTSGDLYQM 221
           G  +H  Y+A +  L++T GD ++M
Sbjct: 737 GYRKHNAYVATQGPLQETFGDFWRM 761


>CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative
           dodecenoylCoA deltaisomerase protein.
          Length = 324

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 665 SLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQ---VLEIVAEEAKGKIK 516
           S+ +  Q  I+   D  Y G  + E+F Q+L ERE     +E++ E  +G  K
Sbjct: 240 SIAKYPQLCIRHDRDAAYYGTFSAESFEQAL-EREAANVTVELLQEAKEGADK 291


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -2

Query: 259 RWLKQTSGDLYQMEQIRREH---PDLVLYNGYDEIFASGLLAGA 137
           RW  +  G + QM  +  +H   PD+VLYN  D  +   L+  A
Sbjct: 90  RWEPKEYGGV-QMLHVPSDHIWRPDIVLYNNADGHYEVTLMTKA 132


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 811,780
Number of Sequences: 2352
Number of extensions: 16527
Number of successful extensions: 40
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 80665782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)