Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0991.Seq
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical pr...    31   0.69 
Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U80814-2|AAB37993.1|  335|Caenorhabditis elegans Serpentine rece...    29   4.9  
AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical ...    29   4.9  
AF099003-1|AAC68742.1|  440|Caenorhabditis elegans Hypothetical ...    28   8.5  

>Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical
           protein C38D4.5 protein.
          Length = 837

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +1

Query: 250 SATYARQCNKCVDLIQGQFYPTQGWNVVHHHRQTIRRINNCPIVI---AVFFKAERIVER 420
           S ++  +C    ++   Q  PT   +   HH Q      + PI++   A F  + R  ER
Sbjct: 317 SVSFQNKCTVLKNVPMPQVLPTTS-SSFDHHPQYHSNTPDRPILMEDSADFTPSSRCEER 375

Query: 421 RDGGDGIEAITFSRCRKL 474
           R  GDG E +   RC  L
Sbjct: 376 RGSGDGREPVRTIRCGDL 393


>Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical
           protein W07A12.6 protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -3

Query: 180 TVTTKSSPLVCWRALMVVSAVPTTSWAGAIRGSLRR 73
           TVT  ++PL+ W AL+++ ++ + +   A+  SL+R
Sbjct: 21  TVTVAATPLIAWTALVILGSITSNNILSAL--SLKR 54


>U80814-2|AAB37993.1|  335|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 8 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -3

Query: 282 TLVTLPGVGG*NRPLAISIR-WSRSVVNILILCSITVTTKSSPL 154
           TL TL  +   + PLAI I+   R ++N+L+L  + +TTKS  L
Sbjct: 185 TLYTLIHMTIISIPLAIGIQILRRKIINLLVLKGVDLTTKSRNL 228


>AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.5 protein.
          Length = 994

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 690 PTTSTG*SESASPGSVQYSAGHRRFIR 610
           PTT+T    S SPGSV    G RR +R
Sbjct: 538 PTTATAPQGSGSPGSVDPIRGSRRSVR 564


>AF099003-1|AAC68742.1|  440|Caenorhabditis elegans Hypothetical
           protein Y59C2A.2 protein.
          Length = 440

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 188 HKIRMFTTDLLHLIEIARGLFQPPTPGNVTSVL 286
           H+I +F  DLLH+ E+ + L  PP    +T VL
Sbjct: 401 HQIFVFIIDLLHMFELQQPL-NPPVAPLITVVL 432


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,685,679
Number of Sequences: 27780
Number of extensions: 372495
Number of successful extensions: 1127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)