Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0991.Seq
(773 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 24 1.8
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 24 1.8
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 24 1.8
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 3.2
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 4.2
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 4.2
AY656663-1|AAT68000.1| 148|Apis mellifera pteropsin protein. 22 5.5
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 22 5.5
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 22 5.5
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 22 7.3
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 7.3
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 7.3
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 22 7.3
AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective... 22 7.3
AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein. 22 7.3
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 23.8 bits (49), Expect = 1.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +2
Query: 182 IEHKIRMFTTDLLHLIEIARGLFQPPTPGN 271
I+ I+ D++ +I+ A + PTPGN
Sbjct: 163 IQKXIKKAKEDVIEVIQKAHNMELEPTPGN 192
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.8 bits (49), Expect = 1.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 548 FPVPVHARKGFVQRPRRSNHPRINRR 625
FPVPVH F++ R ++N R
Sbjct: 239 FPVPVHRWYKFIEGSSRRQPVQLNER 264
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.8 bits (49), Expect = 1.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 327 IPALSGVKLTLDQINTLVTLPGV 259
+ AL + TLD++NT +PGV
Sbjct: 143 VQALEAMLYTLDKLNTQDIVPGV 165
Score = 22.6 bits (46), Expect = 4.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 142 GADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKV 17
GA IGS GW +G+V E +++ +Q + N V
Sbjct: 368 GAFSWIGSD----GWSARGLVSDGNEAEVEGTLSVQPQANPV 405
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.0 bits (47), Expect = 3.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 199 DVHDGSAPSDRDRQRSVSA 255
+VH+G DRDR+ SA
Sbjct: 1428 EVHNGGQQEDRDRKTLTSA 1446
Score = 21.4 bits (43), Expect = 9.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 226 QMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGST 116
Q ++ RR PD + ++ FA+G A + GST
Sbjct: 175 QRQEERRLRPDEIKVEVGEDEFANGGAARDESKAGST 211
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 4.2
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = -2
Query: 259 RWLKQTSGDLYQMEQIRREH---PDLVLYNGYDEIFASGLLAGADGGIGSTYN--IMGWR 95
RW + G + +M + +H PD+VLYN D F L A + Y+ ++ W+
Sbjct: 91 RWEPKEYGGV-KMLHVPSDHIWRPDIVLYNNADGNFEVTLATKA-----TIYHQGLVEWK 144
Query: 94 YQGIVKALKEGDIQ 53
I K+ E D++
Sbjct: 145 PPAIYKSSCEIDVE 158
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.2
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = -2
Query: 199 PDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQ 53
PD +LYN D ++S ++ + + T ++ W GI ++ + D++
Sbjct: 90 PDTILYNNADPQYSSAVI-NTNVIVSHTGEVV-WLSHGIFRSSCDIDVE 136
>AY656663-1|AAT68000.1| 148|Apis mellifera pteropsin protein.
Length = 148
Score = 22.2 bits (45), Expect = 5.5
Identities = 8/29 (27%), Positives = 13/29 (44%)
Frame = -2
Query: 313 WGKTDPGSDQHTCYIAWRRWLKQTSGDLY 227
WG P + +C ++W T+ D Y
Sbjct: 37 WGSYGPEAGNVSCSVSWEVHDPVTNSDTY 65
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 22.2 bits (45), Expect = 5.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 462 SAKRYGFDAVSAVTPFYYPFSFEE 391
SA+R G D V P PF+F+E
Sbjct: 598 SARRSG-DVAVIVPPIIEPFTFQE 620
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 22.2 bits (45), Expect = 5.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 623 DGLYVGGSTGEAFVQSLSEREQVLE 549
+GL GGS+G A + +L + + E
Sbjct: 300 EGLLCGGSSGAALIAALKIAKDIPE 324
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -2
Query: 256 WLKQTSGDLYQMEQIRREHPDLVLYN 179
W + Y + Q E PDL YN
Sbjct: 173 WSWREERQAYYLHQFAPEQPDLNYYN 198
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 7.3
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -2
Query: 259 RWLKQTSGDLYQMEQIRREH---PDLVLYNGYDEIFASGLLAGA 137
RW + G + +M + +H PD+VLYN D + L+ A
Sbjct: 91 RWEPKEYGGV-KMLHVPSDHIWRPDIVLYNNADGNYEVTLMTKA 133
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.8 bits (44), Expect = 7.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 199 PDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQ 53
PD+VLYN D F L A + T + W+ I K+ E D++
Sbjct: 109 PDIVLYNNADGNFEVTLATKAT--LNYTGRV-EWKPPAIYKSSCEIDVE 154
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = -2
Query: 256 WLKQTSGDLYQMEQIRREHPDLVLYN 179
W + Y + Q E PDL YN
Sbjct: 173 WSWREERQAYYLHQFAPEQPDLNYYN 198
>AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective
protein-1 protein.
Length = 128
Score = 21.8 bits (44), Expect = 7.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 271 CNKCVDLIQGQFYPTQGWNVVHHHRQTIRRIN 366
CNKC+ +F ++ N HR + R +N
Sbjct: 87 CNKCIGCSAEKFECSKTSNPCLPHRNSDRDLN 118
>AB022908-1|BAA86909.1| 493|Apis mellifera amylase protein.
Length = 493
Score = 21.8 bits (44), Expect = 7.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +2
Query: 80 NDPLIAPAHDVV 115
NDP AP HD +
Sbjct: 22 NDPHFAPGHDAI 33
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,241
Number of Sequences: 438
Number of extensions: 4875
Number of successful extensions: 38
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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