Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0987.Seq
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 157 1e-39
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 153 3e-38
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 144 2e-35
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 136 3e-33
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 125 8e-30
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 65 9e-12
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 50 4e-07
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 31 0.24
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 0.98
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.3
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 27 3.0
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 5.2
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 25 9.2
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 9.2
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 9.2
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 157 bits (382), Expect = 1e-39
Identities = 72/85 (84%), Positives = 80/85 (94%)
Frame = +3
Query: 507 KDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFE 686
KDAG I+GLNVLRIINEPTAAAIAYGLD+ GE NVLIFDLGGGTFDVS+LTIE+GIFE
Sbjct: 157 KDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVSLLTIEEGIFE 216
Query: 687 VKSTAGDTHLGGEDFDNRMVNHFVQ 761
VK+TAGDTHLGGEDFD+R+VNHF+Q
Sbjct: 217 VKATAGDTHLGGEDFDSRLVNHFIQ 241
Score = 140 bits (338), Expect = 3e-34
Identities = 76/155 (49%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Frame = +1
Query: 49 AVGIDLGTTYSCRWCLPAREGGDHRQRPGQQDH-SVLCCVHRHRASHRRCRQEPGGDEPQ 225
++GIDLGTTYSC G + S + R + + + P
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN-PH 62
Query: 226 QHNIRCQTSHGRKFEDATVQADMKYWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVL 405
+ GRKF+D VQ+DMK+WPF+V+S GKP ++V YKGE KTF PEE+SSMVL
Sbjct: 63 NTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVL 122
Query: 406 TKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 510
KM+ETAEAYLG V +AV+TVPAYFNDSQRQATK
Sbjct: 123 MKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATK 157
Score = 106 bits (255), Expect = 3e-24
Identities = 50/56 (89%), Positives = 53/56 (94%)
Frame = +2
Query: 86 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 253
VG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+NTIFDAKRL
Sbjct: 16 VGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRL 71
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 153 bits (371), Expect = 3e-38
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +3
Query: 507 KDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFE 686
KDAG I+GLNVLRIINEPTAAAIAYGLD+ E NVLIFDLGGGTFDVS+LTIE+GIFE
Sbjct: 157 KDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVSLLTIEEGIFE 216
Query: 687 VKSTAGDTHLGGEDFDNRMVNHFVQ 761
VK+TAGDTHLGGEDFD+R+VNHF Q
Sbjct: 217 VKATAGDTHLGGEDFDSRLVNHFAQ 241
Score = 132 bits (319), Expect = 5e-32
Identities = 72/155 (46%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Frame = +1
Query: 49 AVGIDLGTTYSCRWCLPAREGGDHRQRPGQQDH-SVLCCVHRHRASHRRCRQEPGGDEPQ 225
++GIDLGTTYSC G + S + R + + + P
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN-PH 62
Query: 226 QHNIRCQTSHGRKFEDATVQADMKYWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVL 405
+ GR+F D VQ+DMK+WPF+V+ GKP I+V +KGE KTF PEE+SSMVL
Sbjct: 63 NTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVL 122
Query: 406 TKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 510
KM+E+AEA+LG V +AV+TVPAYFNDSQRQATK
Sbjct: 123 LKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATK 157
Score = 106 bits (255), Expect = 3e-24
Identities = 50/56 (89%), Positives = 53/56 (94%)
Frame = +2
Query: 86 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 253
VG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+NTIFDAKRL
Sbjct: 16 VGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHNTIFDAKRL 71
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 144 bits (348), Expect = 2e-35
Identities = 66/89 (74%), Positives = 76/89 (85%)
Frame = +3
Query: 495 KTSHKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIED 674
+ + KDAG I+GLNVLRIINEPTAAAIAYGLD K +NVLIFDLGGGTFDVS+L I+
Sbjct: 157 RAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVSLLKIQG 216
Query: 675 GIFEVKSTAGDTHLGGEDFDNRMVNHFVQ 761
G+FEV +TAGDTHLGGEDFDN +V HF+Q
Sbjct: 217 GVFEVLATAGDTHLGGEDFDNALVEHFIQ 245
Score = 118 bits (283), Expect = 1e-27
Identities = 67/157 (42%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Frame = +1
Query: 49 AVGIDLGTTYSCRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRR---CRQEPGGDE 219
A+GIDLGTTYSC + E + P Q + R +
Sbjct: 8 AIGIDLGTTYSC---VAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMN 64
Query: 220 PQQHNIRCQTSHGRKFEDATVQADMKYWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSM 399
P+ + GR++ED Q D+K+WPF+V+ + G P I+V Y GE K F +E+S+M
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124
Query: 400 VLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 510
VLTKMKE +EA L K V+ AVITVPAYF+DSQR ATK
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATK 161
Score = 92.7 bits (220), Expect = 5e-20
Identities = 42/56 (75%), Positives = 48/56 (85%)
Frame = +2
Query: 86 VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 253
V V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP NT+FDAKRL
Sbjct: 20 VAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRNTVFDAKRL 75
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 136 bits (330), Expect = 3e-33
Identities = 59/85 (69%), Positives = 79/85 (92%)
Frame = +3
Query: 507 KDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFE 686
KDAGTI+GLNV+RI+NEPTAAAIAYGLDK T E++++++DLGGGTFDVS+L+I++G+FE
Sbjct: 190 KDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT-EKHIVVYDLGGGTFDVSLLSIDNGVFE 248
Query: 687 VKSTAGDTHLGGEDFDNRMVNHFVQ 761
V +T+GDTHLGGEDFDNR++N+ +
Sbjct: 249 VLATSGDTHLGGEDFDNRVINYLAR 273
Score = 120 bits (288), Expect = 3e-28
Identities = 64/156 (41%), Positives = 91/156 (58%), Gaps = 3/156 (1%)
Frame = +1
Query: 52 VGIDLGTTYSCRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHR---RCRQEPGGDEP 222
+GIDLGTTYSC + + G Q + + R + P
Sbjct: 38 IGIDLGTTYSC---VAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNP 94
Query: 223 QQHNIRCQTSHGRKFEDATVQADMKYWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMV 402
+ + GRKF++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S+M+
Sbjct: 95 ENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMI 154
Query: 403 LTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 510
L+KMK+TAEAYLGK V +AV+TVPAYFND+QRQATK
Sbjct: 155 LSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATK 190
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 125 bits (301), Expect = 8e-30
Identities = 58/90 (64%), Positives = 72/90 (80%)
Frame = +3
Query: 507 KDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFE 686
K AG I+GLNVLR++NEPTAAA+AYGLDKK + V +FDLGGGTFD+SIL + +G+FE
Sbjct: 203 KAAGAIAGLNVLRVVNEPTAAALAYGLDKKN--DAIVAVFDLGGGTFDISILELNNGVFE 260
Query: 687 VKSTAGDTHLGGEDFDNRMVNHFVQGSRGN 776
V+ST GDTHLGGEDFD +V H V+ + N
Sbjct: 261 VRSTNGDTHLGGEDFDVALVRHIVETFKKN 290
Score = 94.3 bits (224), Expect = 2e-20
Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +1
Query: 40 KAPAVGIDLGTTYSCRWCLPAREGGDHRQRPGQQDH-SVLCCVHRHRASHRRCRQEPGGD 216
K P +GIDLGTT SC + + G + SV+ +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 217 EPQQHNIRCQTSHGRKFEDATVQADMKYWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 396
P+ + GR+F++ VQ D+K P+++V + KT+ P ++
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGG 165
Query: 397 MVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 510
+L+KM+ETA YLGK V+NAV+TVPAYFNDSQRQATK
Sbjct: 166 FILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATK 203
Score = 60.5 bits (140), Expect = 3e-10
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +2
Query: 77 TLVVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPNNTIFDAKRL 253
T + + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +NP NT F KRL
Sbjct: 61 TSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVINPENTFFATKRL 120
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 65.3 bits (152), Expect = 9e-12
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +3
Query: 510 DAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE----RNVLIFDLGGGTFDVSILTIEDG 677
+A I+GLN LR++N+ AAA+ YG+ K E R V I D G + VSI+ G
Sbjct: 162 EAANIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRG 221
Query: 678 IFEVKSTAGDTHLGGEDFDNRMVNHF 755
F +KST D +LG + D ++++F
Sbjct: 222 QFHIKSTVCDRNLGSRNMDKALIDYF 247
Score = 50.4 bits (115), Expect = 3e-07
Identities = 22/57 (38%), Positives = 37/57 (64%)
Frame = +2
Query: 83 VVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 253
V+ V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A N NT+ KRL
Sbjct: 18 VIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEASNFRNTVGSLKRL 74
Score = 45.2 bits (102), Expect = 1e-05
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 GRKFEDATVQ-ADMKYWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEA 432
GR ++D ++ + + ++ G KV Y E+ F ++ + TK+K AEA
Sbjct: 76 GRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAYFTKIKAIAEA 135
Query: 433 YLGKTVQNAVITVPAYFNDSQRQA 504
L +V + VI++PA+F D QR+A
Sbjct: 136 ELIGSVSDVVISIPAWFTDIQRRA 159
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 50.0 bits (114), Expect = 4e-07
Identities = 22/85 (25%), Positives = 50/85 (58%)
Frame = +3
Query: 507 KDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFE 686
+ A +GL VL++I++P A +A ++ ++ V++ + G +VS+++++ G+
Sbjct: 183 ESAANEAGLPVLQLIHDPAAVILALMYSEEVLIDKTVVVANFGATRSEVSVVSVKGGLMT 242
Query: 687 VKSTAGDTHLGGEDFDNRMVNHFVQ 761
+ ++ D +LGGE + +VN F +
Sbjct: 243 ILASVHDENLGGEQLTDVLVNFFAK 267
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +1
Query: 361 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQA 504
++K E S L ++ E+AE +LG V V++VP YF D+QR+A
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKA 181
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/50 (30%), Positives = 31/50 (62%)
Frame = +2
Query: 104 GKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRL 253
GK +++AN++GNR PS +++ + G A+ Q+ N +N++ + + L
Sbjct: 44 GKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNSVTNFRDL 93
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 30.7 bits (66), Expect = 0.24
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 110 VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLTDVS 265
+EI+ R S VAF ER+ G A N P ++I + K L D +
Sbjct: 45 LEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAHSIRNVKELLDTA 96
Score = 30.7 bits (66), Expect = 0.24
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 361 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQR 498
+++ + EE+ +M + AE + + + V+TVP +FN+ QR
Sbjct: 131 DEENYSLEEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQR 176
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 0.98
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 733 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSK 623
+KSSP K VSP V SK +S V + S +P +K
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -2
Query: 733 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLS 587
+ S PP P + IP PPPRS ST R P P S
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 2.3
Identities = 28/126 (22%), Positives = 53/126 (42%)
Frame = -1
Query: 641 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFVACL*ESLKYAGTVI 462
+++ + + S SS L T S S+S I S + F + S + I
Sbjct: 565 SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSST------SSTFSSASTSSPSSISSSI 618
Query: 461 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLPPSLTTSKGQYFMSAC 282
++ T+L + S + +S+ + S +LSS + + + SL+T S+
Sbjct: 619 SSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSIST---IPISSSLSTYSSSVIPSSS 675
Query: 281 TVASSN 264
T+ SS+
Sbjct: 676 TLVSSS 681
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 139 VALVVGDDLHLPVLEDTNDKSTWYPDRFLLRVL 41
+ L+ DDLHL VLE + D S R +L++L
Sbjct: 84 IGLMGCDDLHLQVLEQSGDASERVHARKVLKLL 116
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 5.2
Identities = 19/57 (33%), Positives = 22/57 (38%)
Frame = +3
Query: 585 LDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 755
LDK G+ I GG T SIL +GI VK E F+N F
Sbjct: 48 LDKAPAGKVKDYIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKF 104
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 41 KHPQ*ESIWVPRTLVVGVF-QHGKVEII 121
KHPQ + +WVP + + ++G EI+
Sbjct: 131 KHPQIDGVWVPYDRAISIAKRYGVYEIL 158
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 388 VSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 510
++ ++ K A LGK + FN+SQ+QAT+
Sbjct: 57 INEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATE 97
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 637 AVPSTCPSLPSRMVSSR*NPPPATPTW 717
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,449,277
Number of Sequences: 5004
Number of extensions: 74431
Number of successful extensions: 281
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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