Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0985.Seq
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 157 9e-39
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677... 83 2e-16
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 53 2e-07
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 37 0.015
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 36 0.026
03_04_0071 + 17048222-17048227,17048348-17048601,17048679-17048940 31 0.98
03_02_1019 + 13244003-13245202,13245347-13245493,13245772-132460... 29 3.9
09_02_0397 - 8549273-8549380,8549718-8549765,8549875-8549964,855... 28 6.9
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 28 9.1
02_02_0412 - 9950286-9950380,9950530-9951203,9951402-9951580,995... 28 9.1
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 157 bits (381), Expect = 9e-39
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = +3
Query: 3 ITHHNELNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 182
+THHNELNM LYMRIAPELY K LVVGGLDRVYEIG+QFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 311 VTHHNELNMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMA 370
Query: 183 YADYNDLMTITESILSGMVQSIHG 254
YADYNDL+ +TE++LSGMV+ + G
Sbjct: 371 YADYNDLIELTETMLSGMVKELTG 394
Score = 125 bits (302), Expect = 3e-29
Identities = 52/73 (71%), Positives = 64/73 (87%)
Frame = +1
Query: 508 EEECINPTFILDHPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQRERF 687
EE C+NPTFI++HP+IMSPL+K+HR PGLTERFE++V K E+CNAYTELNDP QR+RF
Sbjct: 478 EETCVNPTFIINHPEIMSPLAKWHRSRPGLTERFELFVNKHEVCNAYTELNDPVVQRQRF 537
Query: 688 EEQAKNRAAGDDE 726
EEQ K+R +GDDE
Sbjct: 538 EEQLKDRQSGDDE 550
Score = 88.6 bits (210), Expect = 5e-18
Identities = 42/87 (48%), Positives = 55/87 (63%)
Frame = +2
Query: 257 YKVKYHPEGPEGKEIEIDFTPPFARVPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCN 436
YK+KYH G E IEIDFTPPF ++ M+ LE + KL P L + EAN +L + C
Sbjct: 396 YKIKYHANGVEKPPIEIDFTPPFRKIDMIEELEAM--AKLNIPKDLSSDEANKYLIDACA 453
Query: 437 THQIECSPPRTTARLLDKLVSVFLRRS 517
+ ++C PP+TT RLLDKLV FL +
Sbjct: 454 KYDVKCPPPQTTTRLLDKLVGHFLEET 480
>02_05_0003 -
24867053-24867145,24867264-24867437,24867673-24867735,
24868108-24868198,24869579-24869673,24870471-24870668,
24871475-24871648,24872335-24872439,24872645-24872737,
24873688-24873690,24874776-24874844,24875208-24875265,
24875810-24875918,24876603-24876714,24877992-24878204,
24878214-24878546
Length = 660
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/63 (57%), Positives = 44/63 (69%)
Frame = +3
Query: 75 VVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMTITESILSGMVQSIHG 254
VVGGL++VYEIGR FRNEGI HNPEFTT E Y AY+DY +M + E I++ + HG
Sbjct: 299 VVGGLEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYESMMNLAEEIVTRCAMATHG 358
Query: 255 PTR 263
R
Sbjct: 359 KLR 361
Score = 68.1 bits (159), Expect = 7e-12
Identities = 29/58 (50%), Positives = 41/58 (70%)
Frame = +1
Query: 502 ISEEECINPTFILDHPQIMSPLSKYHRDVPGLTERFEVYVAKKEICNAYTELNDPATQ 675
+ E + PTF+LD+P +SPL+K HR GLTERFE+++ +EI NA++EL DP Q
Sbjct: 494 VVESSLVQPTFVLDYPVEISPLAKPHRRYAGLTERFELFICGREIGNAFSELTDPIDQ 551
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 53.2 bits (122), Expect = 2e-07
Identities = 20/67 (29%), Positives = 40/67 (59%)
Frame = +3
Query: 48 APELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYNDLMTITESIL 227
+P+L+ +ML+V G ++ Y+I R FR+E + PEFT + +A+ D++ + E ++
Sbjct: 287 SPQLFKQMLMVSGFEKYYQIARCFRDEDLRADRQPEFTQLDMEIAFTSMEDMLKLNEELM 346
Query: 228 SGMVQSI 248
+ Q +
Sbjct: 347 RHIFQEV 353
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 48 APELYHKMLVVGGLDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAY-ADYNDLMTITES 221
+P+L+ +M + GG +RV+E+G FR E + H EF + MA Y+++ + +
Sbjct: 256 SPQLHKQMAICGGFERVFEVGPVFRAEDSNTHRHLCEFVGLDMEMAIKGHYSEVCDVVDR 315
Query: 222 ILSGMVQSIH 251
+ M ++
Sbjct: 316 LFVAMFDHLN 325
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 36.3 bits (80), Expect = 0.026
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +3
Query: 48 APELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEF 173
+P+LY +M + GG +RV+E+G FR E + TH CEF
Sbjct: 297 SPQLYKQMAICGGFERVFEVGPVFRAENSN-THR---HLCEF 334
>03_04_0071 + 17048222-17048227,17048348-17048601,17048679-17048940
Length = 173
Score = 31.1 bits (67), Expect = 0.98
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 284 PEGKEIEIDFTPPFARVPMMATLERVLNVKLPAPDKLDTPEANDFLNNLCNTHQIECSPP 463
PE + ++I PF+ +P A + R+ + + P D TP N + N NT +P
Sbjct: 17 PERRRLDIVVVRPFSSIPKQAAVPRI-SPRPPLQDASRTPAGN--IKNTENTSFSSSTPI 73
Query: 464 RT 469
RT
Sbjct: 74 RT 75
>03_02_1019 +
13244003-13245202,13245347-13245493,13245772-13246099,
13246930-13246994
Length = 579
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 733 GEFHRHQQHDSWLALRIFRVVSPGHLIRCRH 641
G + + + W AL FR+ +P H +R RH
Sbjct: 523 GSYTDYISNQLWRALEHFRMTTPNHAVRDRH 553
>09_02_0397 -
8549273-8549380,8549718-8549765,8549875-8549964,
8550479-8550562,8551119-8551280,8551729-8551781,
8552763-8552807,8553840-8553876,8554212-8554320,
8554391-8554818,8554939-8555085
Length = 436
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 721 RHQQHDSWLALRIFRVVSPGHLIRCRHY 638
RH D+W+ L + SPG+L RC H+
Sbjct: 170 RHTMEDAWVLLPDASMESPGNL-RCAHF 196
>12_01_0151 -
1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -3
Query: 612 FKPLCKSWNISMVLREGTHNLRMIQYKC-RIYTLLLRNTE-TNLSKSLAVV 466
F LC +I++ EG HNL + C ++ TL L TE T L + L +V
Sbjct: 606 FGTLCNLQSINLAQIEGIHNL-FSSFACHKLRTLTLSGTEITRLPQCLTLV 655
>02_02_0412 -
9950286-9950380,9950530-9951203,9951402-9951580,
9952578-9952633,9953233-9953262,9953820-9953982
Length = 398
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 587 TSRWYLERGLII*G*SNINVGFIHSSSEIQKPIYPR 480
T W + G + G SN+NVGF+ S E+ P + +
Sbjct: 269 TGIWLDDEGFVAEG-SNMNVGFVTQSKELLMPRFDK 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,358,333
Number of Sequences: 37544
Number of extensions: 463981
Number of successful extensions: 1082
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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