Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0985.Seq
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    24   1.3  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    24   1.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.3  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   5.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.3  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 398 TPEANDFLNNLCNTHQIECSP-PRTTARLLDKLVSVFL 508
           TP+A +   NL +  + ECSP      ++ DK+V   +
Sbjct: 57  TPDAAELKRNLPDALENECSPCSEKQKKIADKVVQFLI 94


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 398 TPEANDFLNNLCNTHQIECSP-PRTTARLLDKLVSVFL 508
           TP+A +   NL +  + ECSP      ++ DK+V   +
Sbjct: 57  TPDAAELKRNLPDALENECSPCSEKQKKIADKVVQFLI 94


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 520 YTPPQKYRNQFIQEPRGGP 464
           + PP  YR +  Q PR GP
Sbjct: 159 FIPPNAYRFRPPQNPRFGP 177


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 520 YTPPQKYRNQFIQEPRGGP 464
           + PP  YR +  Q PR GP
Sbjct: 159 FIPPNAYRFRPPQNPRFGP 177


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 520 YTPPQKYRNQFIQEPRGGP 464
           + PP  YR +  Q PR GP
Sbjct: 397 FIPPNAYRFRPPQNPRFGP 415


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 386  DKLDTPEANDFLNNLCNTHQIECSPPRTTARLLD 487
            D LDT + +  +NN+    +  C   +T A+  D
Sbjct: 1422 DILDTADEDLLINNVFYEDETSCMLDKTRAQTFD 1455


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 42  RIAPELYHKMLVVGGLDRVYE--IGRQFRNEGIDL 140
           RI PELY + LVV  ++   E  + R   +E  DL
Sbjct: 250 RITPELYSEHLVVPEIEDNLETSLFRPLSSEATDL 284



 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 499 CISEEECINPTFILDHPQI 555
           CI+  E I   F  DHP +
Sbjct: 195 CIATPEAIELHFTTDHPSV 213


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 352 QCCHHRYSSKGWCEIDFYFL 293
           Q C  R +S GW   D  FL
Sbjct: 172 QVCSLRMASYGWTTDDLVFL 191


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 352 QCCHHRYSSKGWCEIDFYFL 293
           Q C  R +S GW   D  FL
Sbjct: 172 QVCSLRMASYGWTTDDLVFL 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,230
Number of Sequences: 438
Number of extensions: 4927
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)