Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0983.Seq
         (540 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070570-1|AAL48041.1|  569|Drosophila melanogaster RE11315p pro...    28   9.4  
AL121806-8|CAB65884.1|  592|Drosophila melanogaster EG:BACR42I17...    28   9.4  
AE014298-159|AAF45591.2|  569|Drosophila melanogaster CG11380-PA...    28   9.4  

>AY070570-1|AAL48041.1|  569|Drosophila melanogaster RE11315p
           protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 359 TPAHRRYAPQTCQYHRGCGHRQRGAQMQLRAF*PQQF 469
           TPA  +YAP    Y    G  Q+  Q+Q + + PQQ+
Sbjct: 332 TPAPVQYAPIDDVYQSYKGRHQQQLQLQQQQYEPQQY 368


>AL121806-8|CAB65884.1|  592|Drosophila melanogaster EG:BACR42I17.7
           protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 359 TPAHRRYAPQTCQYHRGCGHRQRGAQMQLRAF*PQQF 469
           TPA  +YAP    Y    G  Q+  Q+Q + + PQQ+
Sbjct: 355 TPAPVQYAPIDDVYQSYKGRHQQQLQLQQQQYEPQQY 391


>AE014298-159|AAF45591.2|  569|Drosophila melanogaster CG11380-PA
           protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 359 TPAHRRYAPQTCQYHRGCGHRQRGAQMQLRAF*PQQF 469
           TPA  +YAP    Y    G  Q+  Q+Q + + PQQ+
Sbjct: 332 TPAPVQYAPIDDVYQSYKGRHQQQLQLQQQQYEPQQY 368


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,361,222
Number of Sequences: 53049
Number of extensions: 367059
Number of successful extensions: 870
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2053700352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)