Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0981X.Seq
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    29   0.46 
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    28   1.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.9  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    27   3.3  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   3.3  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    26   4.3  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   5.7  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   5.7  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   7.5  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   9.9  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.9  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    25   9.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   9.9  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   9.9  

>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 331 DIKHDVDRILAQHSYAHPYTHAEDLLEIKEENND 432
           D++ D   I+      HP+ HAE +  I  E++D
Sbjct: 307 DVQSDTSEIIENEPGMHPHVHAERMSRIASESSD 340


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = -2

Query: 540 SSPNQSLSELGFFFAGKFYRDAIIIFVTACV----EYVAFIVVLLFDFEKVFCVCVGMSI 373
           SS + S   LG +FAG  +  A+ +FV A +    +Y   + +   D+    C  +G+ I
Sbjct: 14  SSLHVSSRSLGVYFAGIMFASAVWVFVDAALYSAFDYARNLHITFIDWIPFLCSILGIVI 73


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 350 STSCLMSTTAPRLGSSCSVAGPTTSSPLGHSPLS 249
           STSC  ST+ P  G+S +   PT       +PL+
Sbjct: 390 STSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLT 423



 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 21  SVPGGQGPAESTPQQKXAPPAAVRAAHLLLAMCLLSQTSSRNSIQRNTST 170
           S+P G   + STP     PP +  +  + +     S T + +S    TST
Sbjct: 234 SIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 283



 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 350 STSCLMSTTAPRLGSSCSVAGPT 282
           STSC  ST+ P  G+S +   PT
Sbjct: 282 STSCTTSTSIPPTGNSTTPVTPT 304



 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 350 STSCLMSTTAPRLGSSCSVAGPT 282
           STSC  ST+ P  G+S +   PT
Sbjct: 336 STSCTTSTSIPPTGNSTTPVTPT 358


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 382  PYTHAEDLLEIKEENNDKGDIFYASCDEDNDCVTIELPCE 501
            P+ H+  L +I+ E+  +GD+FY +  +  D  +   P +
Sbjct: 1024 PHRHSVSLGQIRGESEVEGDVFYDAPSDKEDLGSSNAPLD 1063


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 664 KSELRLVCAGDKSKLSSTDFGDRVIGESIFMSHSNVIAE 548
           + E  L  + D  K ++ DFGD    E     H N++A+
Sbjct: 239 EDEEGLSLSEDGKKFANIDFGDYSSSEEFLKEHLNILAD 277


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 350 STSCLMSTTAPRLGSSCSVAGPTTSSPLGHSPLSW 246
           +TS   S+T     SS + A PT+SS  G   L+W
Sbjct: 267 ATSVAASSTISSATSSSASASPTSSSVSGKRGLAW 301


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 238 CRNQESGECPKGDEVVGPATEQLEPSRGAVVD-IKHDVDRILAQHSYAHPYTHAEDLLEI 414
           CR+   G CP   ++       L P      D +K D +R    H Y + + + EDL   
Sbjct: 34  CRSFLCGICPH--DIFTNTKMDLGPCPKIHSDKLKSDYERASYSHDYGYEWDYLEDLERH 91

Query: 415 KEENNDKGDI 444
            ++ N + DI
Sbjct: 92  VDDCNKRIDI 101


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 472 HYLRHSLRR--ICRLYRCSPL*FREGLLRVCRDEHKSVVPVSC 350
           H   HS  R  +C    CS   +R+  L++ +  H +V P SC
Sbjct: 43  HLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSC 85


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 253 SGECPKGDEVVGPATEQLEPSRGAVVDIKHDVDR 354
           S   PKG +V      Q   S GA++  + D+D+
Sbjct: 380 SSMLPKGGDVAPDDLNQTNFSNGAIIRYREDIDK 413


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 309 FQLFCCGPHHFISFR 265
           F L CC P  F+ FR
Sbjct: 506 FTLLCCSPERFLQFR 520


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 247 QESGECPKGDEVVGPATEQLEPSRGAVVDIKHDVDRILAQHSYAHPYTHA 396
           Q +   P  ++   P  +Q EP RG   DIK  ++      S  HP  H+
Sbjct: 509 QSTNAEPSNNQSNPPLRDQ-EPQRGDKGDIKSAINNSTEDLSKKHPALHS 557


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 332 TSSMTSTGYWHNTLMLIPTHTQKTFSKSKRRTTIKATYSTQAVTKI 469
           ++S TS+   +NT  L+P+ T  +   S   +T   + S+  +T +
Sbjct: 266 SASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSV 311


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 579 MLSPMTLSPKSVEDNLLLSPAHTNLSSDLG 668
           M  P+TLSP S+   L   P + +++S LG
Sbjct: 415 MQQPLTLSPSSIPSGL---PTYAHVNSPLG 441


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/49 (24%), Positives = 26/49 (53%)
 Frame = +1

Query: 346 VDRILAQHSYAHPYTHAEDLLEIKEENNDKGDIFYASCDEDNDCVTIEL 492
           +++I  +  Y    T +ED  +  EE++ KG+ F+     + D ++ E+
Sbjct: 230 LEKIFERLKYIDVKTDSEDFWDASEEHSIKGEEFHYKKITEGDEISNEI 278


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 191 SXLQKIDAGAAGTTQHVETRKVESALKEMKWWGPQQNNWNP 313
           S + K D    G  Q + ++    ALK ++W G +    +P
Sbjct: 10  SLISKSDIRYVGILQDINSQDSTLALKHVRWCGTEGRKQDP 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,828
Number of Sequences: 5004
Number of extensions: 55194
Number of successful extensions: 210
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)