Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0979.Seq
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.2  
07_03_0846 - 21983581-21986055                                         29   2.8  
12_01_0856 + 8034181-8035425                                           29   3.8  
08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224     29   5.0  
06_01_0655 + 4742267-4742531,4743313-4744136                           28   6.6  
01_06_0739 - 31601656-31602233,31602777-31602906                       28   6.6  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -3

Query: 217 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 83
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 75  DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 224
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>12_01_0856 + 8034181-8035425
          Length = 414

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 711 QRITQCPKASSARTETSRGAKGQKLA*SRCSVRIGTAKARPIDPLV 574
           QRIT    +S+ R   +    GQ     RC V    AK +PID L+
Sbjct: 193 QRITDRTPSSARRQNRNDNVIGQSEDKLRCRVESVVAKKKPIDRLI 238


>08_02_1344 - 26280554-26280785,26281558-26282182,26282718-26284224
          Length = 787

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +3

Query: 33  GAVMHVLRKKTDSID----LRDPNGLRRRVSRFECETRLVKSH 149
           G V+  L + TDS++    L +P+GL RRV  F  E+++   H
Sbjct: 340 GTVLRYLFQDTDSVNNSGGLLNPSGLLRRVRMFVPESQVTSMH 382


>06_01_0655 + 4742267-4742531,4743313-4744136
          Length = 362

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
 Frame = +3

Query: 75  DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 251
           ++RDP  G+R  +  F       +++  E    RG    ++ PD A +AS     + + A
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS-----QRSHA 183

Query: 252 DVASHHRPLGRVHE-PNVRNCGSS---RTEQYYY 341
           + +S + P   + E P V + G+     T  Y Y
Sbjct: 184 EPSSMNMPAFSIEEKPAVMSAGNKTMYNTNAYAY 217


>01_06_0739 - 31601656-31602233,31602777-31602906
          Length = 235

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 522 LVAANVHSDVAF*SFDVGSSYHCEAKFAKRWIVHPSKGNVS 400
           L+AAN     AF + D+ + Y   AK    +++HP+ G +S
Sbjct: 115 LLAANTRFYNAFKNGDLAAMYSLWAKGDHVYVIHPAAGRIS 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,934,556
Number of Sequences: 37544
Number of extensions: 422848
Number of successful extensions: 1147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)