Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0978.Seq
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-16|CAB61089.1|  535|Caenorhabditis elegans Hypothetical...    72   4e-13
AC024775-2|AAK68456.1|  452|Caenorhabditis elegans Hypothetical ...    34   0.087
AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine r...    28   5.7  
U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine rece...    28   7.6  
AF026210-5|AAB71287.1|  632|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AL132949-16|CAB61089.1|  535|Caenorhabditis elegans Hypothetical
           protein Y53F4B.18 protein.
          Length = 535

 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 30/89 (33%), Positives = 49/89 (55%)
 Frame = -3

Query: 707 EFETILSDDAVLLFPTFPHPAHLHYRVYYKFLNCGYLTMFNALGLPVTACPIEMSKKGLP 528
           + + +L  D +LLFP++P  A  H        N  Y  ++N L +PV  CP+ +  +GLP
Sbjct: 441 QVKELLGTDGILLFPSWPCTAMYHNEPILAPFNFCYTALWNVLSVPVVQCPLGLDSRGLP 500

Query: 527 VGIPNCANRYKDHLTVAVAKEFEKAFGGW 441
           +G+    N+Y D   +A+A+  E+ F GW
Sbjct: 501 LGVQVIGNQYTDRNLIAIAQVLEEGFNGW 529


>AC024775-2|AAK68456.1|  452|Caenorhabditis elegans Hypothetical
           protein Y41D4A.6 protein.
          Length = 452

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 662 TFPHPAHLHYRVYYKFLNCGYLTMF-NALGLPVTACPIEMSKKGLPVGIPNCANRYKDHL 486
           T P  + L   ++ K  N  Y T   N  G+P  + P+ +++ GLP+G+   A++ +D  
Sbjct: 379 TAPKYSELRDTLFSKEDNDDYFTQAANLAGIPSISVPVGVAEDGLPIGVQLMADKLQDRA 438

Query: 485 TVAVA 471
              VA
Sbjct: 439 VCDVA 443


>AF022980-10|AAG24193.1|  350|Caenorhabditis elegans Serpentine
           receptor, class j protein44 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 660 FSTPRPLALPSVL*IFELWIFNDVQCI-RAASYGLSD*NVEKRPPCRHPKLRKQI 499
           FS   P+A+   L IF   IFN + CI RA +   SD + ++    +   LRK I
Sbjct: 293 FSFMDPIAIILCLPIFRYRIFNVINCIARACAKNQSDNDSKRENSTQTINLRKAI 347


>U53339-7|AAA96203.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 13 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = -1

Query: 244 NIYTVEIS*GYNCLIHIVMRMSYLKG---LVHFSISF*CDLCIGNPLFKY--RSVVFLFF 80
           N+ T+ I+   + L++ VM + +  G    V F I   CDL I   LFKY   SV+FL  
Sbjct: 55  NLKTLLIAYFISILLYAVM-LCFAFGYQFFVPFFIKSNCDLIINKTLFKYIHTSVIFLLT 113

Query: 79  T 77
           T
Sbjct: 114 T 114


>AF026210-5|AAB71287.1|  632|Caenorhabditis elegans Hypothetical
           protein F48A11.5a protein.
          Length = 632

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 596 LNIHSSKIYSTLGSASGRGVEKSETTKLHRQIKLSQI 706
           +NI   ++ +T G   GR V   ETT +  Q+K  +I
Sbjct: 88  INIEDDEMPATRGRRRGRAVTPDETTTVDNQVKRLRI 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,210,096
Number of Sequences: 27780
Number of extensions: 361442
Number of successful extensions: 768
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)