Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0978.Seq
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.93 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.93 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 260 KNPIWSNIPIY 292
           + PIWSN PIY
Sbjct: 309 QRPIWSNFPIY 319


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 260 KNPIWSNIPIY 292
           + PIWSN PIY
Sbjct: 309 QRPIWSNFPIY 319


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 618 IFELWIFNDVQC 583
           +F++WIF D+ C
Sbjct: 127 VFKVWIFGDLWC 138


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 704  FETILSDDAVLLFPTFPHPAHLH 636
            F   +     + F TFPHP + H
Sbjct: 1733 FREEMDPSKAMQFQTFPHPGNGH 1755


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 507 CAIWDADREAFFRHFNRTGRNWQ 575
           C +W  DR+ F     RTG + Q
Sbjct: 186 CQLWAIDRQCFQTIMMRTGLSRQ 208


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 476 PPQLNDLCICLR 511
           PP+++  CIC+R
Sbjct: 481 PPEIHKSCICVR 492


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 476 PPQLNDLCICLR 511
           PP+++  CIC+R
Sbjct: 481 PPEIHKSCICVR 492


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -3

Query: 602  YLTMFNALGLPVTACPIEMSKKGLPVGIPNCANRYKDHLTVAVAK 468
            YLT  N +G   ++  + +  +G   GIP  A     + T  V +
Sbjct: 1474 YLTSHNKIGSSPSSPVLSVRTQGQAPGIPPAATFLSPNSTTLVLR 1518


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -3

Query: 602  YLTMFNALGLPVTACPIEMSKKGLPVGIPNCANRYKDHLTVAVAK 468
            YLT  N +G   ++  + +  +G   GIP  A     + T  V +
Sbjct: 1470 YLTSHNKIGSSPSSPVLSVRTQGQAPGIPPAATFLSPNSTTLVLR 1514


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,738
Number of Sequences: 438
Number of extensions: 4473
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)