Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0975.Seq
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.0  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    27   2.7  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.6  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    26   3.6  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   4.7  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   4.7  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   6.2  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    25   8.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.3  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 18   LPRLAPLNIASRGWSWGQMTTW*SHSLLLNCW 113
            +P     N+ +R WS+  ++TW    L+LN W
Sbjct: 988  MPSKMSYNLENRTWSYDLISTW-PAELVLNVW 1018


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 8    ILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVR--TLLQRGA 145
            ++ LTA      + + LE+G + YL KPF   +L+  VR   LL++ A
Sbjct: 2262 VIALTADIQKSAKQRCLEVGMNFYLTKPFTQKQLVNAVREFVLLEKSA 2309


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = -1

Query: 132 SNVRTRASSSAKANGFTR*SSAPNSSPLTRCSMVPSAVSNRI 7
           S+V T  SSSA ++     SSA  S+ L+  S++PS+ S+ +
Sbjct: 8   SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSML 49


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -1

Query: 414 SFGSKSLSILPRSRFTATSIALVSLSKFMSHTCEAISERGSTSP*WRRKNSSRETL 247
           SF   + S+   +     SI  + L  F SHT +  +++G+ +   R+K   +ET+
Sbjct: 48  SFRCPTFSLSKYTCVLPASIPEMILFTFSSHTFQTPTKKGNKTKKKRKKEKKKETI 103


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -2

Query: 458 PAPQACNPRRARSELASAQSRCRFCRAAASPPHQ 357
           P+P+  +P        S ++ C  CR + S PH+
Sbjct: 15  PSPRTSSPSSNFKTCVSNENGCINCRCSPSEPHE 48


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +2

Query: 8   ILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLQRGATGDXRXSVSGCRFD 187
           I+ LTA   +  R + L  G +D+L KP +   L  ++       A  D       CRF 
Sbjct: 464 IVALTASSLMADRNEALAAGCNDFLTKPVSLVWLEKKITEWGCMQALIDWN---GWCRFR 520

Query: 188 GR 193
           GR
Sbjct: 521 GR 522


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 405 SKSLSILPRSRFTATSIALVSLSKFMSHTCEAISERGSTSP 283
           S+  +ILP++  T       S+ K +  T EA+ E  +T+P
Sbjct: 612 SEKGNILPKTVETHMKALTTSVDKVLDQTAEALEEFVNTAP 652


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 335 FDSDTNAIDVAVKRLRG 385
           FD DTN ++ A KRL G
Sbjct: 180 FDDDTNGLEEAKKRLAG 196


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 119  PAPAVQQKRMASPGSHLPPTPAP 51
            P P+V    + +P S +PP P P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKP 1184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,091
Number of Sequences: 5004
Number of extensions: 39622
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)