Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0975.Seq
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0933 + 26067109-26067232,26067334-26067486,26068929-260692... 32 0.39
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 31 0.69
03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648... 30 1.2
02_01_0612 - 4573595-4573699,4574153-4574200,4574653-4575693,457... 30 1.2
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 30 1.6
10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719 29 2.1
02_05_1072 - 33878676-33878747,33878926-33879949,33880684-338808... 29 2.1
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 29 2.1
03_05_1115 + 30506986-30507396 29 2.8
09_06_0298 - 22117451-22118698 29 3.7
03_05_0402 - 23851755-23851802,23852012-23852022,23853055-23853427 29 3.7
11_01_0292 - 2200714-2201478,2202691-2203395 28 4.8
09_02_0082 - 4060018-4061604 28 4.8
08_02_0133 - 12997143-12997331,12997420-12997510,12997934-12998232 28 4.8
03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891 28 4.8
02_02_0672 - 12814610-12815703,12815743-12816226 28 4.8
06_03_0327 - 19607989-19608023,19608268-19608426,19608440-19608914 28 6.4
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 28 6.4
03_04_0221 - 18796189-18796899 28 6.4
01_06_0956 - 33343503-33344086,33344225-33344384 28 6.4
09_06_0081 + 20745627-20748144,20748211-20748308 27 8.5
06_01_0292 + 2136637-2137050,2137162-2137671 27 8.5
04_04_0347 + 24564589-24565296 27 8.5
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 27 8.5
03_06_0286 - 32852447-32852731,32853523-32853615,32853692-328538... 27 8.5
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 27 8.5
02_05_0037 - 25305460-25305609,25305672-25305742,25305847-253059... 27 8.5
02_01_0490 + 3541056-3542276 27 8.5
>06_03_0933 +
26067109-26067232,26067334-26067486,26068929-26069279,
26069375-26069451,26069665-26070982,26071948-26072009,
26072253-26072309
Length = 713
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 2 MTILLLTALGTIEHRVKGLELGADDYLVKPFAFAEL 109
+ +++ +A G +E +KG+ GA DYLVKP + ++
Sbjct: 89 LPVIMQSANGELETMMKGVTHGACDYLVKPVSLKDI 124
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 31.1 bits (67), Expect = 0.69
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = -2
Query: 143 PRAA----VMCAPAPAVQQKRMASPGSHLPPTPAP 51
PRAA V+ PAP ++ RM +P +PP PAP
Sbjct: 502 PRAAAAPLVLRGPAPHLRVSRMPAPPIPMPPAPAP 536
>03_02_0213 +
6480521-6480644,6482347-6482499,6482582-6482980,
6483158-6483234,6483990-6485312
Length = 691
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/76 (22%), Positives = 38/76 (50%)
Frame = +2
Query: 2 MTILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLQRGATGDXRXSVSGCR 181
+ +++++A + +KG++ GA DYL+KP EL + ++++ + SG
Sbjct: 89 LPVIMMSADSRTDIVMKGIKHGACDYLIKPVRMEELKNIWQHVIRKKFNENKEHEHSGSL 148
Query: 182 FDGRSRQPQSHPQRHA 229
D +P ++ +A
Sbjct: 149 DDTDRTRPTNNDNEYA 164
>02_01_0612 -
4573595-4573699,4574153-4574200,4574653-4575693,
4576088-4576164,4576265-4576657,4577230-4577382,
4577938-4578100
Length = 659
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 2 MTILLLTALGTIEHRVKGLELGADDYLVKPFAFAEL 109
+ +++L+A G + +KG+ GA DYL+KP +L
Sbjct: 102 LPVIMLSANGETQTVMKGITHGACDYLLKPVRLEQL 137
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +2
Query: 2 MTILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLQRGATGDXRXSVSGCR 181
+ +++L+ G + +KG+ GA DYL+KP EL + +++R R ++
Sbjct: 92 LPVIMLSVNGETKTVMKGITHGACDYLLKPVRIEELRNIWQHVVRRKFGNRERNNLD--- 148
Query: 182 FDGRSRQPQSHPQRH 226
F +PQS H
Sbjct: 149 FSKECNKPQSADTDH 163
>10_01_0165 - 1869312-1869449,1870486-1872326,1872356-1872719
Length = 780
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 131 LQRGATGDXRXSVSGCRFDGRSRQPQSHPQRHAHHFDQ*RVSLLEFFLRHQGEVLPRSLI 310
+ + A G+ S+ G R D RS+ + HP+ H + D LL+ F+R Q L R+L+
Sbjct: 476 IAQSAMGEECVSIVG-RSDYRSKSLE-HPRYHFYSLDDDNTILLDDFMRKQSSTL-RTLL 532
>02_05_1072 -
33878676-33878747,33878926-33879949,33880684-33880804,
33881150-33881560,33881781-33881933,33882321-33882468
Length = 642
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 2 MTILLLTALGTIEHRVKGLELGADDYLVKPFAFAEL 109
+ +++L+ G + +KG+ GA DYL+KP EL
Sbjct: 97 LPVIMLSVNGETKTVLKGITHGACDYLLKPVRIEEL 132
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 8 ILLLTALGTIEHRVKGLELGADDYLVKPFAFAELL 112
I++++ + VK L LGA +YLVKP ELL
Sbjct: 106 IIMMSNRDEVSVVVKCLRLGAAEYLVKPLRMNELL 140
>03_05_1115 + 30506986-30507396
Length = 136
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 101 AELLARVRTLLQRGATGDXRXSVSGCRFDGRSRQPQSHPQRHAHH 235
AE +A + R A+ R SG S P++ P+RH HH
Sbjct: 81 AERVAEGMCQMLRTASWKQRRRASGSSSSSSSPSPRAAPERHHHH 125
>09_06_0298 - 22117451-22118698
Length = 415
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 204 RKVTRSGTRITLTSKEFLCWSSSFAIRA 287
R V R G R+ +S FL W+SSFA+ A
Sbjct: 309 RWVKREGRRLLGSSVLFLGWTSSFAVEA 336
>03_05_0402 - 23851755-23851802,23852012-23852022,23853055-23853427
Length = 143
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Frame = -2
Query: 401 SRCRFCRAAASPPHQ*HWYRCQ-----NSCPIPARR*ASGAALRPDGEGRTP 261
SRCR A H+ YRCQ N IP + +GA + P G TP
Sbjct: 23 SRCRTLPQPAPTSHEVCPYRCQSPSAANHIRIPPQHAPAGAEVVPPSAGATP 74
>11_01_0292 - 2200714-2201478,2202691-2203395
Length = 489
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -1
Query: 417 ISFGSKSLSILPRSRFTATSIAL-VSLSKFMSH 322
I F S+ + +LP+SRF S+ L VS+S +SH
Sbjct: 284 IPFDSRIVFLLPQSRFPIWSVVLFVSISLALSH 316
>09_02_0082 - 4060018-4061604
Length = 528
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 119 PAPAVQQKRMASPGSHLPPTPAP 51
PAP ++ RM +P +PP PAP
Sbjct: 405 PAPHLRVPRMLAPPIPMPPAPAP 427
>08_02_0133 - 12997143-12997331,12997420-12997510,12997934-12998232
Length = 192
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 143 PRAAVMCAPAPAVQQKRMASPGSHLPPTPAP 51
P A APAPA+ ++R G+H P P
Sbjct: 23 PLAPCTAAPAPALSRRRSLLSGAHTADEPPP 53
>03_03_0260 - 15946321-15946431,15946651-15946716,15947601-15947891
Length = 155
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = -2
Query: 464 DHPAPQACNPRRARSELASAQSR-CRFCRAAA---SPPHQ*HWYRCQNSCPIPARR*ASG 297
D+P+ Q RR S+ + R C + R + + HQ H R ++S P +R G
Sbjct: 2 DYPSGQRERVRRLGSQRSKRWWRGCGYGRCSGEIHTAAHQAHCGRWRSSGPQRRQRRDGG 61
Query: 296 AALRPDGEGRTPA 258
+ ++P G GR A
Sbjct: 62 SLMKPGGGGRRRA 74
>02_02_0672 - 12814610-12815703,12815743-12816226
Length = 525
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 137 AAVMCAPAPAVQQKRMASPGSHLPPTPAP 51
AA++ P+P+ + G HLP PAP
Sbjct: 8 AALLPLPSPSCSSSEDSDDGKHLPSPPAP 36
>06_03_0327 - 19607989-19608023,19608268-19608426,19608440-19608914
Length = 222
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 367 RHINSIGIAVKIHVPYLRGDKRAGQHFALMAKEEL 263
RH + G+ V+IHVPY+ D R H EL
Sbjct: 116 RHRDEAGLQVEIHVPYV--DLRPNGHIISRGSSEL 148
>03_05_0937 - 28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 260 LEFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKR 376
LE ++HQG+ +P L++ D N + + +AV R
Sbjct: 1048 LELRIKHQGKGVPADLLSQMYEDDNKEQSDEGMSLAVSR 1086
>03_04_0221 - 18796189-18796899
Length = 236
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 428 ARSELASAQSRCRFCRAAASPPHQ*HWYRCQN 333
A LASA RC A A PH+ H R +N
Sbjct: 3 APGHLASAPRRCHRVEAVAVEPHRRHAVRLEN 34
>01_06_0956 - 33343503-33344086,33344225-33344384
Length = 247
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Frame = -2
Query: 122 APAPAVQQKRMASP----GSHLPPTPAP 51
APAPA Q+R + HLPP PAP
Sbjct: 161 APAPAATQRRHSGHKKHRSRHLPPKPAP 188
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 152 HQXPRAAVMCAPAPAVQQKRMASPGSHLPPTPAP 51
H + + +PAP ++ + M +P PP PAP
Sbjct: 486 HVPTTSLALRSPAPHLRVRHMPAPPVPTPPAPAP 519
>06_01_0292 + 2136637-2137050,2137162-2137671
Length = 307
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -2
Query: 479 LKWLTDHPAPQACNPRRARSELASAQSRCRFCR--AAASPPHQ*HWYRC 339
L+ L P+P + + + S A+ + C CR A A PHQ + +C
Sbjct: 199 LRALKAAPSPASASAMQPSSSAAATLTMCPSCRRVATAGAPHQPNHQQC 247
>04_04_0347 + 24564589-24565296
Length = 235
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 122 APAPAVQQKRMASPGSHLPPTPAP*RDVQWCQA 24
APAPAV + SHL P PAP VQ+ A
Sbjct: 140 APAPAV----IHGTNSHLAPAPAPSSHVQYSPA 168
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 119 PAPAVQQKRMASPGSHLPPTPAP 51
P P + K+ +S G LPP PAP
Sbjct: 405 PPPLLAPKQQSSGGPILPPAPAP 427
>03_06_0286 -
32852447-32852731,32853523-32853615,32853692-32853860,
32854467-32854715,32854792-32854940,32855511-32855699,
32856027-32856272,32856431-32856438,32857083-32857206
Length = 503
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 129 YCSAGXLVTXEXQFQVADLMVDLVSRKVTRSGTRITLTSKEFLCWSSS 272
Y +A ++ +AD++VD + + R + T S + LCW SS
Sbjct: 171 YSAALSIILGSLAVAIADVVVDSMVVERARGEPQSTSGSLQSLCWGSS 218
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = -1
Query: 192 RPSNRQPETXFRXSPVAPRCSNVRTRASSSAKANGFTR*SSAPNSSPLTRCSMVPSAVSN 13
RPS R+ R P + +SSS N TR +S SSP S PS+ S+
Sbjct: 35 RPSARRSPAVSRPDPAPSIARTIWPSSSSSNSGNTSTRKASPSPSSPAPAAS-TPSSSSS 93
>02_05_0037 -
25305460-25305609,25305672-25305742,25305847-25305985,
25306035-25306081,25306176-25306335
Length = 188
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 2 MTILLLTALGTIEHRVKGLELGADDYLVKP 91
+TI+L + L +I + LE GA+D+LVKP
Sbjct: 144 LTIVLPSLLCSIGLLTRCLEEGAEDFLVKP 173
>02_01_0490 + 3541056-3542276
Length = 406
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -1
Query: 153 SPVAPRCSNVRTRASSSAKANGFTR*SSAPNSSPLTRCSMVPSAVSN 13
SP AP CS+ K T+ S++ ++SP T + PS SN
Sbjct: 119 SPKAPTCSSRWRELLRLKKVQTPTKPSASTSASPSTATAATPSRSSN 165
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,407,106
Number of Sequences: 37544
Number of extensions: 345464
Number of successful extensions: 1371
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -