Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0975.Seq
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF047657-12|AAK18941.3|  367|Caenorhabditis elegans Serpentine r...    28   5.7  
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    27   7.5  
Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical...    27   7.5  
U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 143 PRAAVMCAPAPAVQQKRMASPGSHLPPTPAP*RD 42
           P A    APAPA ++    +P +   P PAP  D
Sbjct: 577 PAAEETPAPAPAAEETPATAPAAEETPAPAPAAD 610



 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 143 PRAAVMCAPAPAVQQKRMASPGSHLPPTPAP 51
           P A    APAPAV++    +P     P PAP
Sbjct: 617 PAAEETPAPAPAVEETPAPAPAVEETPAPAP 647



 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 122 APAPAVQQKRMASPGSHLPPTPAP 51
           APAPAV++    +P +   P PAP
Sbjct: 634 APAPAVEETPAPAPAAEETPAPAP 657



 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 143 PRAAVMCAPAPAVQQKRMASPGSHLPPTPAP 51
           P A    APAPA ++    +P +   P PAP
Sbjct: 557 PAADETPAPAPAAEETPAPAPAAEETPAPAP 587



 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 122 APAPAVQQKRMASPGSHLPPTPAP 51
           APAPA ++   ++P +   P PAP
Sbjct: 692 APAPAAEETPASAPAAEETPAPAP 715


>AF047657-12|AAK18941.3|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein4 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 383 GKIDNDFEPKLIQTVRGVGYMLEVPDGQ*AISAPVFAGNP 502
           GK DN    KL+  V    ++LEVP+G   ++A  F GNP
Sbjct: 260 GKSDNT--TKLVLFVTISFFILEVPNGFAHVTAGAFHGNP 297


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 119 PAPAVQQKRMASPGSHLPPTPAP 51
           P PAVQQ   +   +  PP PAP
Sbjct: 382 PMPAVQQAPSSQQATQAPPKPAP 404


>Z73427-5|CAA97803.1|  917|Caenorhabditis elegans Hypothetical
           protein F58B3.5 protein.
          Length = 917

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
 Frame = -2

Query: 188 HQIGNLKLXFXXHQXPRAAVMCAPAPAVQQKR---MASPGSHLPPTPAP 51
           HQ+  L+      Q P+  V C P P           +P    P TPAP
Sbjct: 682 HQLIELETAAGIKQVPKPVVSCTPTPTSTPASGIITEAPKKEAPSTPAP 730


>AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical
           protein Y47D3A.16 protein.
          Length = 580

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 182 FDGRSRQPQSHPQRHAHHFD 241
           F+    + Q+ PQRHA+H+D
Sbjct: 7   FELEGHESQASPQRHAYHYD 26


>U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical protein
            D2021.1 protein.
          Length = 1168

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 451  LKHVTHAAHGLN*LRLKVVVDFAAQPLHR---HINSIGIAV 338
            L H+ H  HG+N ++L + V     P H+   H+ SI I +
Sbjct: 887  LSHLGHQVHGMNTVKLFMKVPGCRTPAHQDSNHMASININI 927


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,694,640
Number of Sequences: 27780
Number of extensions: 244929
Number of successful extensions: 888
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)