Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0972X.Seq
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3... 29 0.42
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 25 5.2
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 25 5.2
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 25 5.2
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 25 5.2
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 25 5.2
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 25 6.8
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo... 25 6.8
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 24 9.0
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 24 9.0
>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 28.7 bits (61), Expect = 0.42
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 45 TDEQNCFSKDNRAYQFLSIGVDQSSINSSSFLVSCWMPQQKTVVYNFL 188
TD N F +D+R YQ+ GV+ + L + P+ T +++FL
Sbjct: 123 TDNFNAFEEDSRVYQY---GVNHKLSCKNLLLAINYSPKTYTKIFDFL 167
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 69 KDNRAYQFLSIGVDQSSINSSSFLVSCWMP 158
K+ FLSI +++S IN + F W P
Sbjct: 94 KNFEVKDFLSIWINESFINENRFYSEIWGP 123
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 69 KDNRAYQFLSIGVDQSSINSSSFLVSCWMP 158
K+ FLSI +++S IN + F W P
Sbjct: 114 KNFEVKDFLSIWINESFINENRFYSEIWGP 143
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 69 KDNRAYQFLSIGVDQSSINSSSFLVSCWMP 158
K+ FLSI +++S IN + F W P
Sbjct: 94 KNFEVKDFLSIWINESFINENRFYSEIWGP 123
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 5.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 278 TNYNITFYIWDSRLNKTYASSKYVNTTTGEGIPSPPLRVTVRRTS 412
T +T + SRL KT+ Y+ T T EG P + + ++S
Sbjct: 274 TEQPLTSDLLPSRLPKTWDQRLYLTTKTTEGYYCPSMIYPLSKSS 318
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 69 KDNRAYQFLSIGVDQSSINSSSFLVSCWMP 158
K+ FLSI +++S IN + F W P
Sbjct: 94 KNFEVKDFLSIWINESFINENRFYSEIWGP 123
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 159 QQKTVVYNFLPSISEVGDGKWMNMSWTNDSVYGLQ 263
Q+ V N+ PS+S+ DG ++ ++ ND LQ
Sbjct: 241 QELKVFSNYDPSVSQSIDGDNVSKAFINDQSLALQ 275
>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 24.6 bits (51), Expect = 6.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 284 YNITFYIWDSRLNKTYASSKYVNTTTGEGIPSPPLRVTVRR 406
Y+ TFY D K A + + EG+P L + VRR
Sbjct: 232 YDYTFYFSDPSPKKYAADAFSLPKLFFEGVPIKRLHIHVRR 272
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 24.6 bits (51), Expect = 6.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 382 RRRYSFACSRVHVFT*RICLIQ-SAVPYVKRYIIV 281
RR+Y R+ +FT LIQ SA+ ++ R+ IV
Sbjct: 435 RRKYHSLIERLDLFTPSFVLIQSSALGFLTRHAIV 469
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 24.2 bits (50), Expect = 9.0
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 93 LSIGVDQSSINSSSFLVSCWMPQQKTVVYNFLPSISEV 206
+ +G+ S +S+L+S W + + +F+P +S V
Sbjct: 591 IQMGITDSDDPQASYLISAWGRICRVLGSDFVPFLSSV 628
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 24.2 bits (50), Expect = 9.0
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -3
Query: 322 IQSAVPYVKRYIIVREW----LQICKP*TLSFVQDMFIH 218
I ++ YV+ YI++R+W L + KP + +F+H
Sbjct: 54 IGASETYVQVYILLRDWIDGTLDLYKPKLQKVLYPIFVH 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,084
Number of Sequences: 5004
Number of extensions: 37890
Number of successful extensions: 108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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