Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0972X.Seq
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0923 - 9095162-9095281,9095402-9095551,9095648-9095783,909...    29   1.7  
03_04_0126 + 17504478-17505020,17505215-17505346                       28   3.8  
07_03_1534 + 27526170-27526265,27527030-27527091,27527488-275275...    27   6.7  
07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392     27   6.7  
06_03_1227 + 28557855-28558323,28558426-28558586,28558850-285589...    27   6.7  
06_03_1032 + 27029698-27029785,27030640-27031275,27031739-270319...    27   8.8  
01_01_0988 - 7806113-7806193,7806275-7806499,7806589-7806709,780...    27   8.8  

>08_01_0923 -
           9095162-9095281,9095402-9095551,9095648-9095783,
           9095916-9095995,9096112-9096269,9096358-9096612,
           9096804-9097205,9097287-9097408,9097623-9097741,
           9098506-9098597,9098763-9098934
          Length = 601

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 180 NFLPSISEVGDGKWMNMSWTNDSVYGLQ 263
           +F P IS+ G  KW+   WT+ SV  ++
Sbjct: 436 DFEPQISDFGLAKWLPKQWTHHSVIPIE 463


>03_04_0126 + 17504478-17505020,17505215-17505346
          Length = 224

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 251 NTVICPGHVHPFTVANFRYRRQEIVDDGLLLWHPARHE 138
           NTV+    + P   A    R     DD +++ HP+R +
Sbjct: 29  NTVVTKNTLSPLASAQIPLRASLYADDAIIILHPSRQD 66


>07_03_1534 +
           27526170-27526265,27527030-27527091,27527488-27527542,
           27528168-27528266,27528346-27528432,27528951-27529067,
           27529479-27529571,27529915-27529945,27530188-27530357
          Length = 269

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 69  KDNRAYQFLSIGVDQSSINSSSFLVSCWMPQQKTVVYNFLPSISEVGDGKWMNMSW 236
           KD   +Q ++I +++S       L+   +P     + N+L S++ VG G++M  SW
Sbjct: 115 KDYPKFQAVAIAIERSGFKI--VLLLRLVPLLPFNMLNYLLSVTPVGIGEYMLASW 168


>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
          Length = 313

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = +2

Query: 248 CLWFTNLKPFTNYNITFYIWDSRLNKTYASSKYVNTTTGEGIPSPPLRVTVRRTSGAALK 427
           C     L P  + NIT   WD+ +N     S Y   T  +  P P  R T+  ++    K
Sbjct: 86  CAKGVRLNPNEDPNIT---WDTHVNSDCDPSNYQKVTKKKKCPVPGCRETLTFSNTIRCK 142

Query: 428 CC 433
            C
Sbjct: 143 DC 144


>06_03_1227 +
           28557855-28558323,28558426-28558586,28558850-28558929,
           28559015-28559150,28559239-28559388,28559717-28559899
          Length = 392

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 180 NFLPSISEVGDGKWMNMSWTNDSV 251
           +F P IS+ G  KW+   WT+ ++
Sbjct: 206 DFQPQISDFGLAKWLPSEWTHRAI 229


>06_03_1032 +
           27029698-27029785,27030640-27031275,27031739-27031993,
           27032451-27032605,27032704-27032783,27032891-27033026,
           27033228-27033377,27033474-27033641
          Length = 555

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 180 NFLPSISEVGDGKWMNMSWTNDSVYGLQ 263
           ++ P IS+ G  KW+   WT+  V+ ++
Sbjct: 374 DYQPQISDFGLAKWLPDKWTHHVVFPIE 401


>01_01_0988 -
           7806113-7806193,7806275-7806499,7806589-7806709,
           7807065-7807256,7807884-7807947,7808135-7808261,
           7808338-7808411,7808494-7808598,7808763-7808865,
           7808966-7809028,7809113-7809296,7809788-7809858
          Length = 469

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +3

Query: 30  DCYDGTDEQNCFSKDNRAYQFLSIGVDQSSINSSSFLVSCWMPQQKTVVYNF 185
           DC  GTD ++ F +   A QFL +       N    L S      K    NF
Sbjct: 340 DCITGTDYRSKFLRSQLALQFLKVSFGLKVANVEKILKSVMSINVKDKDCNF 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,348,678
Number of Sequences: 37544
Number of extensions: 246398
Number of successful extensions: 591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)