Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0972X.Seq
         (441 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    25   0.37 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   4.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   7.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.9  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.0 bits (52), Expect = 0.37
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 281 NYNITFYIWDSRLNKTYASSKYVNTTTGEGIPSP 382
           NYN  +  +++  N  Y   +Y N    E IP P
Sbjct: 93  NYNNNYNNYNNNYNTNYKKLQYYNIINIEQIPVP 126


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 371 IPSPPLRVTVRRTSGAALKCCGT 439
           +  PP RV    +SGA L C  T
Sbjct: 33  VMEPPSRVEFSNSSGAWLDCTAT 55


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 371 IPSPPLRVTVRRTSGAALKCCGT 439
           +  PP RV    +SGA L C  T
Sbjct: 33  VMEPPSRVEFSNSSGAWLDCTAT 55


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 75  NRAYQFLSIGVDQSSINSSSFLVSCWMP 158
           N A    S+ +DQS++  +   V+ W P
Sbjct: 732 NVATTVTSMSIDQSTVIQTGANVNLWQP 759


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 239 CPGHVHPFTVANFRYRRQEIVDDGLL 162
           C G V  F +A  ++ R  ++D GL+
Sbjct: 124 CSGIVSAFKIAVDKFDRLWVLDSGLV 149


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 347 RIYL-THMSYSICCPICKTLYYSS*MAS 267
           RI++ T  ++S C P+   +YY S + S
Sbjct: 209 RIFVATIFTFSYCIPMILIIYYYSQIVS 236


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 18  NGREDCYDGTDEQNCFSKDNRAYQFLSIGVDQSS 119
           N  ++ +DGT   N   K+N    ++  G+ +S+
Sbjct: 114 NSADEGFDGTYPTNVVVKNNGTCLYVPPGIFKST 147


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 426 FNAAPDVLRTVTLRGGEGIP 367
           FN  P  L  +T + G G P
Sbjct: 81  FNGVPSSLNVITNKTGNGGP 100


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 239 CPGHVHPFTVANFRYRRQEIVDDGLL 162
           C G V  + +A  ++ R  ++D GL+
Sbjct: 122 CSGIVSAYKIAIDKFDRLWVLDSGLI 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,851
Number of Sequences: 438
Number of extensions: 2901
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)