Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0971.Seq
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   1.8  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    25   9.5  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   9.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.5  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/70 (21%), Positives = 30/70 (42%)
 Frame = -2

Query: 261 EATSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSGVSHSKRETRRRSPFGS 82
           EA +A     A +AEA   E+ K+++  EP+++  +K+       +      R       
Sbjct: 93  EAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNGWVHR 152

Query: 81  RRSMLSVFFL 52
            R+   + F+
Sbjct: 153 MRTQKGIIFI 162


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +2

Query: 158  PPDSRGSTVSISLPDSARLASALEAFRHNP-ADVASHHRPLGRVHEPNVRNCGSSR 322
            P D +  T S     S+ L   L  F+H+P  DVA     +     P+  N  S R
Sbjct: 1010 PEDQKRKTFSFDTSKSSSLLKKLYRFKHDPNPDVAKTMGEIWDTLVPSDLNLASHR 1065


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 293 PNVRNCGSSRTEQYYYRNDKPSVG 364
           P V N GSSRT+ +Y R    + G
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAG 109


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 539  NFSGTSC*KLFILKDR*AVLSQSL 610
            N  G S  KLFI+KD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,524
Number of Sequences: 5004
Number of extensions: 54923
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)