Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0971.Seq
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287... 40 0.001
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 30 1.4
06_01_0107 - 854756-854883,855126-856968 29 2.4
01_06_0739 - 31601656-31602233,31602777-31602906 29 2.4
07_03_0846 - 21983581-21986055 29 4.3
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 5.6
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706... 28 5.6
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 28 5.6
01_06_0553 + 30173964-30174349,30175124-30175439,30175523-301756... 28 5.6
06_01_0655 + 4742267-4742531,4743313-4744136 28 7.5
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 27 9.9
07_03_1139 + 24254662-24255306 27 9.9
07_03_0626 + 20060013-20060273,20061017-20061274 27 9.9
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 9.9
>09_04_0593 -
18825741-18826702,18826994-18827875,18828687-18828775,
18828942-18829080,18829405-18829531,18829629-18829838
Length = 802
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = -2
Query: 324 VREEPQFRTF-GSCTRPSGRWCEATSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 148
+++EP+FR F GS R G+ + +AG+ N + A +++++S K + Q
Sbjct: 691 IKDEPEFRAFTGSGNRLDGKASKPLAAGISSNPAAASSAISDSNKKV-----------NQ 739
Query: 147 CDFTSGVSHSKRETRRRSPFGSRRSMLS 64
SGVS+S R+ + + FGS +S S
Sbjct: 740 ETAASGVSNSTRQKKGKLVFGSNKSSSS 767
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -2
Query: 216 ASLAESGKDMLTVEPRESGGSKQCDFTSGVSHSKRETRRRSPFGS 82
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>06_01_0107 - 854756-854883,855126-856968
Length = 656
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 548 QKSYHRDNWLVAASVHSDVAFRSFDVGSSYHCEAKFAKR 432
+ S H D+WL A+ S + R D H EA A R
Sbjct: 205 ESSPHGDDWLTLAAASSRLLVRGLDAAPVLHLEAHHAGR 243
>01_06_0739 - 31601656-31602233,31602777-31602906
Length = 235
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -3
Query: 521 LVAASVHSDVAFRSFDVGSSYHCEAKFAKRWIVHPSKGNVSWG*TVVRQ 375
L+AA+ AF++ D+ + Y AK +++HP+ G +S G VV Q
Sbjct: 115 LLAANTRFYNAFKNGDLAAMYSLWAKGDHVYVIHPAAGRIS-GYDVVMQ 162
>07_03_0846 - 21983581-21986055
Length = 824
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 74 DLRDPNGLRRRVSRFECETPLVKSHCLEPPDSRGSTVSISLPDSARLASA 223
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 28.3 bits (60), Expect = 5.6
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 225 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSGVSHSKRETR-RRSPFGSRRSMLSVFFL 52
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 51 TRASR 37
TRA+R
Sbjct: 64 TRAAR 68
>03_05_0823 -
27970038-27970258,27970279-27970544,27970608-27970657,
27971272-27971538,27971633-27972001,27972373-27973278
Length = 692
Score = 28.3 bits (60), Expect = 5.6
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Frame = +2
Query: 2 RHRTELYPDLRSR-DARVKKKTDSIDLRDPNGLRRRVSRFECET--PLVKSHCLEPPDSR 172
RH L ++RS D KT ++L GL + L SH L +
Sbjct: 144 RHVRMLTHEIRSTLDRHTILKTTLVELGGTLGLEECALWMPSRSGSSLQLSHTLRHQITV 203
Query: 173 GSTVSISLPDSARLASALEAFRHNPADVASHHRPLGRV 286
GSTVSI+LP + F N A + H PL R+
Sbjct: 204 GSTVSINLP------VVNQVFSSNRAIIIPHTSPLARI 235
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -3
Query: 524 WLVAASVHSDVAFRSFDVGSSYHCEAKFAKRWIVHP 417
WL V S A RS G+ C+ + W +HP
Sbjct: 1108 WLWKVEVPSLTAIRSLSTGTVLGCQVEKHMNWYLHP 1143
>01_06_0553 +
30173964-30174349,30175124-30175439,30175523-30175618,
30175710-30175778,30175878-30176006,30176165-30176264,
30177321-30177454
Length = 409
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 116 FECETPLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPADVASHHR 271
FE PL+KS E PDS ++I+ PD + +H P V + R
Sbjct: 247 FESGIPLLKSRLQELPDS--DNITIAFPDDGAWKRFYKQLQHFPMVVCNKVR 296
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 27.9 bits (59), Expect = 7.5
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +2
Query: 74 DLRDPN-GLRRRVSRFECETPLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 250
++RDP G+R + F +++ E RG ++ PD A +AS + + A
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS-----QRSHA 183
Query: 251 DVASHHRPLGRVHE-PNVRNCGSS---RTEQYYY 340
+ +S + P + E P V + G+ T Y Y
Sbjct: 184 EPSSMNMPAFSIEEKPAVMSAGNKTMYNTNAYAY 217
>07_03_1632 + 28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 32 RSRDARVKKKTDSIDLRDPNGLRRRVSR--FECETPL-VKSHCLEPPDSRGSTVSISLPD 202
+S + + SI + N R ++ FE TP VKS EPP++R S ++ L +
Sbjct: 917 KSEEPFAMTDSKSIKVAHSNQTSRNLNNELFEDSTPFAVKSGMSEPPENRSSEQALDLAE 976
Query: 203 SA 208
A
Sbjct: 977 PA 978
>07_03_1139 + 24254662-24255306
Length = 214
Score = 27.5 bits (58), Expect = 9.9
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Frame = +2
Query: 35 SRDARVKKKTDSIDLRDPNGLRRRVSRFECETPLVKSHCLEPPDSRGSTVSISLPDSARL 214
+R +++ + P L R S TP H +PPD+ + V+ S SA
Sbjct: 92 TRTPAIRRPRTGARIAAPAALHGRASHLVAMTP--PPH--KPPDA--AAVASSHDSSALC 145
Query: 215 ASALE--AFRHNPADVASHHRPLGRVHEPNV-----RNCGSSRTEQYYYRNDKPS 358
A R +PA H PLGR P+ N S E+ ++R + P+
Sbjct: 146 CPKTPPPAHRPDPATAVPHLPPLGRDPSPSPLPTAGENSTSPTPEREHHRGESPA 200
>07_03_0626 + 20060013-20060273,20061017-20061274
Length = 172
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 204 RLGWLRP*RRSGIIP 248
RLGWLRP R S ++P
Sbjct: 32 RLGWLRPSRLSAVVP 46
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 197 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 93
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,436,529
Number of Sequences: 37544
Number of extensions: 396482
Number of successful extensions: 1107
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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