Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0971.Seq
         (655 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for MG...    41   0.004
BC048251-1|AAH48251.1|  322|Homo sapiens ZDHHC12 protein protein.      30   6.3  
AL441992-6|CAI15406.1|  210|Homo sapiens zinc finger, DHHC-type ...    30   6.3  
AL356489-1|CAC88180.1|  130|Homo sapiens T cell receptor beta va...    30   6.3  
BX842568-3|CAI40150.1| 1035|Homo sapiens family with sequence si...    30   8.3  
AK125992-1|BAC86381.1|  910|Homo sapiens protein ( Homo sapiens ...    30   8.3  

>BC114377-1|AAI14378.1|   44|Homo sapiens Unknown (protein for
           MGC:134704) protein.
          Length = 44

 Score = 40.7 bits (91), Expect = 0.004
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +2

Query: 509 WLPQASYPCGNFSGTSC*K 565
           W PQASYPCGNFS TSC K
Sbjct: 19  WPPQASYPCGNFSDTSCLK 37



 Score = 37.1 bits (82), Expect = 0.055
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +3

Query: 456 MIGRADIEGSKSNVAMNA 509
           MIGRADIEGSKS+VAMNA
Sbjct: 1   MIGRADIEGSKSDVAMNA 18


>BC048251-1|AAH48251.1|  322|Homo sapiens ZDHHC12 protein protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 233 TPLRPKPA*PNPARICSLWSPESRE 159
           TP  P P  P PA +CS  SPE R+
Sbjct: 68  TPTPPTPVLPGPASLCSPASPELRQ 92


>AL441992-6|CAI15406.1|  210|Homo sapiens zinc finger, DHHC-type
           containing 12 protein.
          Length = 210

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 233 TPLRPKPA*PNPARICSLWSPESRE 159
           TP  P P  P PA +CS  SPE R+
Sbjct: 68  TPTPPTPVLPGPASLCSPASPELRQ 92


>AL356489-1|CAC88180.1|  130|Homo sapiens T cell receptor beta
           variable 25/OR9-2 protein.
          Length = 130

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 378 SHDGLTPAHVPF*WVNNPTLGEFCF-AMIGRADIE 479
           S +G+TP H PF WVN+   G+ C  + + R  IE
Sbjct: 60  SRNGITP-HPPFLWVNSTEKGDLCSESTVSRIRIE 93


>BX842568-3|CAI40150.1| 1035|Homo sapiens family with sequence
           similarity 47, member C protein.
          Length = 1035

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 23  PDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETPLVK-SH-CLEPPDSRGSTVSISL 196
           P  R    R +   + +    P   + R+S    E P +  SH CLEPP +RGS +    
Sbjct: 383 PKTRVPPLRPETPKNGVSPLFPEPPKTRISNLRSEPPKIGVSHLCLEPPKTRGSHLRPEP 442

Query: 197 PDS 205
           P++
Sbjct: 443 PET 445


>AK125992-1|BAC86381.1|  910|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44004 fis, clone TESTI4023546, weakly  similar
           to Sialidase (EC 3.2.1.18). ).
          Length = 910

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 23  PDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETPLVK-SH-CLEPPDSRGSTVSISL 196
           P  R    R +   + +    P   + R+S    E P +  SH CLEPP +RGS +    
Sbjct: 258 PKTRVPPLRPETPKNGVSPLFPEPPKTRISNLRSEPPKIGVSHLCLEPPKTRGSHLRPEP 317

Query: 197 PDS 205
           P++
Sbjct: 318 PET 320


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,650,729
Number of Sequences: 237096
Number of extensions: 2112323
Number of successful extensions: 8237
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8234
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)