Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0969.Seq
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 97 3e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 67 2e-12
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 60 3e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 51 1e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 47 3e-06
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 46 5e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 46 5e-06
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 45 9e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 42 7e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 42 7e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 42 9e-05
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 42 1e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 3e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 40 3e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 40 3e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 40 4e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 40 5e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 40 5e-04
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 39 6e-04
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 38 0.002
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 35 0.013
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.023
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 32 0.094
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 32 0.094
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 31 0.22
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 30 0.38
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.87
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 8.1
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 8.1
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.1
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 96.7 bits (230), Expect = 3e-21
Identities = 46/65 (70%), Positives = 51/65 (78%)
Frame = +1
Query: 520 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 699
S TGSGKTL+Y LPAIVHIN QP + GDGPI LVLAPTRELA QIQQ FG +S +R
Sbjct: 166 SATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIR 225
Query: 700 NTCVF 714
NTCV+
Sbjct: 226 NTCVY 230
Score = 96.3 bits (229), Expect = 4e-21
Identities = 42/84 (50%), Positives = 57/84 (67%)
Frame = +3
Query: 258 SLQPFNKNFYDPHPTVLKRSPYKVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 437
+L PF K+FY H V RS +V EYR + E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 438 KTMGYKEPTPIQAQGWPIAMSGKN 509
K +G++ PTPIQ Q WP+AMSG++
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRD 161
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 67.3 bits (157), Expect = 2e-12
Identities = 29/65 (44%), Positives = 44/65 (67%)
Frame = +1
Query: 520 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 699
++TGSGKT+A++LP HI +Q P++ G+GPIA+++ PTRELA QI + F +R
Sbjct: 462 AKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIR 521
Query: 700 NTCVF 714
C +
Sbjct: 522 ACCAY 526
Score = 46.4 bits (105), Expect = 4e-06
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYKVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 431
++ + F K+FY + SP +V+E R + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 432 GVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ ++GY++PT IQAQ P SG++
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRD 457
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/50 (58%), Positives = 38/50 (76%), Gaps = 3/50 (6%)
Frame = +1
Query: 520 SQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQ 660
++TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 293 AETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Score = 41.9 bits (94), Expect = 9e-05
Identities = 16/57 (28%), Positives = 34/57 (59%)
Frame = +3
Query: 339 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKD 288
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 51.2 bits (117), Expect = 1e-07
Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Frame = +1
Query: 520 SQTGSGKTLAYILPAIVHINNQPP--IRRGDGPIALVLAPTRELAQQIQQVA 669
+QTGSGKTLAY+LP + + P R G A+++APTREL QQI VA
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPTRELCQQIYNVA 236
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 46.8 bits (106), Expect = 3e-06
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Frame = +1
Query: 517 RSQTGSGKTLAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 666
+++TGSGKT AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 57 QARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
Score = 30.7 bits (66), Expect = 0.22
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +3
Query: 366 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+ +A
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 46.0 bits (104), Expect = 5e-06
Identities = 29/65 (44%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 520 SQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 696
+QTGSGKT A+ LP I + NN P A+VLAPTRELA QI + G + V
Sbjct: 90 AQTGSGKTAAFALPVIQELWNNPSPF------FAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 697 RNTCV 711
R+ +
Sbjct: 144 RSVVI 148
Score = 30.3 bits (65), Expect = 0.29
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+E D + + + +G+K PTPIQ + P+ ++ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRD 85
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.0 bits (104), Expect = 5e-06
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 675
TGSGKTLAY+LP + + G G AL++APTRELA QI V +
Sbjct: 47 TGSGKTLAYLLPCFDKVTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
Score = 31.1 bits (67), Expect = 0.16
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+ N +++ V G+K+ TP+QA P+ + K+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKD 40
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 45.2 bits (102), Expect = 9e-06
Identities = 23/64 (35%), Positives = 37/64 (57%)
Frame = +1
Query: 520 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 699
++TGSGKT A+++P I H+ + AL+L+P RELA Q +V DF + +R
Sbjct: 113 ARTGSGKTAAFVIPMIEHLKS---TLANSNTRALILSPNRELALQTVKVVKDFSKGTDLR 169
Query: 700 NTCV 711
+ +
Sbjct: 170 SVAI 173
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+ + + + G+K PTPIQ + P+ + G++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRD 108
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 42.3 bits (95), Expect = 7e-05
Identities = 25/54 (46%), Positives = 31/54 (57%)
Frame = +1
Query: 520 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 681
++TGSGKT A+ LP I + P G AL+L PTRELA QI + A G
Sbjct: 51 AKTGSGKTAAFALPIIEKWSKDP-----SGIFALILTPTRELAIQIDEQFAALG 99
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +3
Query: 330 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 500
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 501 GKN 509
G++
Sbjct: 202 GRD 204
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = +1
Query: 520 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 654
++TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 209 AETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 41.9 bits (94), Expect = 9e-05
Identities = 23/61 (37%), Positives = 36/61 (59%)
Frame = +1
Query: 517 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 696
+SQ+G+GKT A+ L + ++ P P A+ LAP+RELA+QI V + G + V
Sbjct: 159 QSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 697 R 699
+
Sbjct: 214 K 214
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +1
Query: 520 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 681
++TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q + G
Sbjct: 83 AKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQTFETLVKIG 135
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 669
TGSGKT+AY+ P + + P G A+++APTREL +QI + A
Sbjct: 92 TGSGKTIAYLFPILQKLQLHVP----GGYRAIIVAPTRELCEQIYRQA 135
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 40.3 bits (90), Expect = 3e-04
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +1
Query: 517 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--ALVLAPTRELAQQIQQ 663
++ TGSGKTLA+ +P + H +R D ALV+APTRELA QI Q
Sbjct: 165 KADTGSGKTLAFGIPILEHC-----LRNVDAKYVQALVVAPTRELAHQICQ 210
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++ +A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
Score = 39.5 bits (88), Expect = 5e-04
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Frame = +1
Query: 520 SQTGSGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQ 660
+QTGSGKT ++ P + + + P P+ + G P L+LAPTREL QI
Sbjct: 213 AQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIH 272
Query: 661 QVAADFGHTSYVRNTCVF 714
+ + F + S+VR V+
Sbjct: 273 EESRKFCYRSWVRPCAVY 290
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 39.9 bits (89), Expect = 4e-04
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Frame = +1
Query: 520 SQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 675
++TGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 133 AKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 39.5 bits (88), Expect = 5e-04
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +1
Query: 517 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 696
+++TG+GKTLA++L A + P +++L+PTRELA QI + A + + +
Sbjct: 82 QAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGI 141
Query: 697 R 699
R
Sbjct: 142 R 142
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 39.5 bits (88), Expect = 5e-04
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 517 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYV 696
++Q+G+GKT + + + I+ +++ AL+LAPTRELAQQIQ+V G V
Sbjct: 62 QAQSGTGKTATFSISVLQKIDTS--LKQCQ---ALILAPTRELAQQIQKVVVALGDLMNV 116
Query: 697 R-NTCV 711
+ C+
Sbjct: 117 ECHACI 122
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 39.1 bits (87), Expect = 6e-04
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 669
TGSGKT A+I+P + + +P ++ L+L PTRELA Q VA
Sbjct: 305 TGSGKTAAFIVPILERLLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
Score = 30.3 bits (65), Expect = 0.29
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+ N + +G+ +G++ PT IQ + P+A+ GK+
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKD 298
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +1
Query: 517 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 681
R++ G+GKT A+++P++ ++ + + L+L PTRELA Q QV G
Sbjct: 87 RAKNGTGKTAAFVIPSLEKVDTKKSKIQ-----TLILVPTRELALQTSQVCKTLG 136
Score = 33.5 bits (73), Expect = 0.031
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
FE+ + G+ G++ P+PIQ + PIA+SG++ LA
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILA 86
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 34.7 bits (76), Expect = 0.013
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 517 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSY 693
++Q+G+GKT + + + I+ +R AL+L+PTRELA QIQ V G H +
Sbjct: 64 QAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNVVLALGDHMNV 118
Query: 694 VRNTCV 711
+ C+
Sbjct: 119 QCHACI 124
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 330 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 479
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.9 bits (74), Expect = 0.023
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 657
TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 182 TGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 31.9 bits (69), Expect = 0.094
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 657
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 31.9 bits (69), Expect = 0.094
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 657
TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 30.7 bits (66), Expect = 0.22
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 517 RSQTGSGKTLAYILPAIVHINNQPPIRRGDGPIA-LVLAPTRELAQQIQQVAADFGHTSY 693
++++G GKT ++L + I P+ DG ++ LVL TRELA QI+ A F
Sbjct: 94 QAKSGMGKTAVFVLSTLQQIE---PV---DGEVSVLVLCHTRELAFQIKNEYARFSKYLP 147
Query: 694 VRNTCVF 714
T VF
Sbjct: 148 DVRTAVF 154
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 29.9 bits (64), Expect = 0.38
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 576 YVHNCWQDVGQRFAGTRLATPTNSFQT*LSASLELEWASVLCNPLSLHL 430
YV NC ++ G T ++TP NS +T + +L + +L L LHL
Sbjct: 590 YVTNCREEQGAFCVSTYISTPDNSLRTLIVLALMALSSIILPLILQLHL 638
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 0.87
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -1
Query: 249 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 76
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 75 HDYFSDLVEDVYLNYGFFLTQG 10
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 458 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNSTYSYLVFISIL 333
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 541 FCRNPFGYAN*FFPDIAIGQP 479
FC NP N FP IAI P
Sbjct: 50 FCINPKSIRNFLFPPIAISDP 70
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 93 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 13
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 526 TGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 651
TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 543 TGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 447 PLSLHLVAHNQENL--LLQSIE 388
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,868
Number of Sequences: 5004
Number of extensions: 62918
Number of successful extensions: 228
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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