Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0968X.Seq
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.91 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   1.6  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.4  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 351 AQSA*T-LCSRPAGEDKEIE 407
           A SA T +CS P  EDKE+E
Sbjct: 597 ASSAPTSVCSSPRSEDKEVE 616


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 98  HSTQLSALRDELAALQRQHQDLKDTYQ---ELTLARQQLQDDYKKLKRE 235
           H  +   LR+E   +  + +  ++  Q   E  L +Q+ + +Y+KLKR+
Sbjct: 11  HDEKFKQLRNEDNKIDLRSRTKEERLQYRREAWLVQQEREQEYEKLKRK 59


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 143 QRQHQDLKDTYQELTLARQQLQDDYKK 223
           QR+H D   + Q+    +QQ QD  ++
Sbjct: 79  QREHSDRVTSQQQQQQQQQQQQDQQQQ 105


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 492 LLQVILQERDLLFLCKGTAFILGAIFRIVR 403
           LLQ + ++R+  +LC+ +  I   I ++V+
Sbjct: 772 LLQHVKEDREGFYLCQASNGIGSGIGKVVQ 801


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 492 LLQVILQERDLLFLCKGTAFILGAIFRIVR 403
           LLQ + ++R+  +LC+ +  I   I ++V+
Sbjct: 768 LLQHVKEDREGFYLCQASNGIGSGIGKVVQ 797


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.127    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,565
Number of Sequences: 438
Number of extensions: 1844
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)