Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0967.Seq
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   1.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   3.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.8  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.7  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   7.7  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   7.7  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 424 STQSGRSAAMNSSQSMRPLPFLSNR 350
           S +SG+ + + S+ +  P P LSNR
Sbjct: 118 SFESGKPSGVISTNTSPPSPILSNR 142


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 38  VQVAPREAAVGPVAQRVADHPGSARXSCTSAS 133
           + VAP  A   P+A  +   PGS+  S TS +
Sbjct: 86  IPVAPEPA---PLASPLVQEPGSSTTSATSGA 114


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 298 MPSMNSFLGISPLLSCPFYGT 236
           MPS++ FL +    +CP  G+
Sbjct: 151 MPSLSEFLSLFGTETCPAIGS 171


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 298 MPSMNSFLGISPLLSCPFYGT 236
           MPS++ FL +    +CP  G+
Sbjct: 151 MPSLSEFLSLFGTETCPAIGS 171


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/23 (34%), Positives = 8/23 (34%)
 Frame = +1

Query: 274 RGXXXXXXXXTPNSTHPGWRWAP 342
           RG        TP     GW W P
Sbjct: 319 RGIRVVLEVDTPAHAGNGWNWGP 341


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 372 RYRSCRTDPPRR 337
           R R+ RT+PPRR
Sbjct: 234 RPRTSRTEPPRR 245


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 559 SASSPYPPLH 588
           S++SPYPP H
Sbjct: 68  SSTSPYPPNH 77


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,686
Number of Sequences: 336
Number of extensions: 3759
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)