Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0967.Seq
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 28 1.2
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 28 1.2
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 28 1.6
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 27 2.7
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 27 3.6
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 26 4.8
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 26 4.8
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 4.8
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 26 4.8
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 6.3
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 6.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 6.3
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 25 8.4
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 25 8.4
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 25 8.4
SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28... 25 8.4
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 331 RWAPWRICSTGTVAASSTGRSSLRRFALTGWNAADPRPMRTKFTT 465
+W+P+ +TG V S TG +RR G NA+ P F +
Sbjct: 501 QWSPFS-SNTGKVFDSPTGSLGMRRSLTVGANASCSNPTNLSFAS 544
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +1
Query: 526 RREIQVRGLPDSASSPYPPLHRHGESRRGLGGARRVPRE--ERSLQSQGTHQHRTAGTVY 699
RRE + D S +PP+ E GG R ERS GT R+ G Y
Sbjct: 495 RREASLSSEQDDLSEDFPPVRESDEQESRSGGRSSAMRVSIERSAARSGT--RRSQGNPY 552
Query: 700 FG*R 711
G R
Sbjct: 553 EGYR 556
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 103 ERQXKLHERLAHLKELQRVSNFSWDDWRKRFLKFMNHKKSRLTDLFRKMDKT 258
ER+ KL +L LKE Q + +W++ RK L + K+ L ++++T
Sbjct: 372 ERREKLESKLTDLKEEQDKLSAAWEEERK-LLDSIKKAKTELEQARIELERT 422
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 264 GLIPRNEFIDGIVNTKFDTSRLEMGAVADLFDRNGSGLID 383
G + + + GI KF + + +L+D NG G +D
Sbjct: 594 GSLSLQDLVSGIAELKFRDVMRNISFIFELYDFNGDGFMD 633
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +3
Query: 255 DNNGLIPRNEFIDGIVNTKFDTSRLEMGAVADLFDRNGSGLIDWEEFIAALRPDWVER 428
D + I +E + F+ + E+ + FD+ G G + E+F+ + VER
Sbjct: 49 DKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVER 106
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 342 VADLFDRNGSGLIDWEEFIAAL 407
V ++FD + +G ID++EFI AL
Sbjct: 68 VFNVFDADKNGYIDFKEFICAL 89
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -1
Query: 430 RRSTQSGRSAAMNSSQSMRPLPFLSNRSATAPISSRDVSNLVLTMPSMNSFLGISPLLS 254
R ST ++ N++ + L FLS R AP+ + + L L P + + +S + S
Sbjct: 48 RLSTLDTSTSTANAAPDPQVLTFLSKRMQAAPLYPKPSAFLELGKPRLTVLVVLSTMSS 106
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 4.8
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = -2
Query: 531 PSPTWNTRTSVGTCRASRVAS-----PRREFCP-HRSGVRGVPPSQGEAPQ*TPPSR*GR 370
P+PT + +G+ SR S PRR P H S +PP+ G P+ TP R
Sbjct: 331 PAPTSSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLSIPSTLPPADG-VPKPTPDGFPRR 389
Query: 369 YRSCRTDPP 343
+ T PP
Sbjct: 390 FERDPTIPP 398
>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 389 LPVDEAATVPVEQIRHGAHLQPGCVE-FGVDDAIDELIPR 273
LP+ + T PV+ +R+ ++ PG E V+ D IPR
Sbjct: 36 LPIVKTHTYPVDFLRNNGNVMPGQSELLPVESTEDITIPR 75
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/45 (24%), Positives = 21/45 (46%)
Frame = +3
Query: 288 IDGIVNTKFDTSRLEMGAVADLFDRNGSGLIDWEEFIAALRPDWV 422
+ G+ + SR +G V ++ NG+ L +W + A W+
Sbjct: 541 LHGLTTIGWILSRENLGIVENIMQNNGTNLKNWRILLKASYKFWL 585
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -1
Query: 451 SASVGGPRRSTQSGRSAAMNSSQSMRPLPFLSNRSATAPISSRDVSNLVLTMPSMNSFLG 272
SA+ S+ +GRSA MNS+ + ++S T P S VS+ + + + +
Sbjct: 202 SAAASASALSSDTGRSATMNSTTFPTA---MKSQSTTKPTLSNSVSSPSIQVSNNQNANN 258
Query: 271 ISPL 260
+PL
Sbjct: 259 STPL 262
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 6.3
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -1
Query: 415 SGRSAAMNSSQSMRPLPFL----SNRSATAPISSRDVSNLVLTMPSMNSFLGISPLLS 254
SG + + NSSQ+ P S+ SAT I+ +S V + SMNS SP+ S
Sbjct: 759 SGYTISSNSSQNSASEPQTAFTSSSSSATPTITQSSISTSVSSQSSMNSSYS-SPISS 815
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -1
Query: 466 SS*ILSASVGGPRRSTQSGRSAAMNSSQSMRPLPFLSNRSATAPISSRDVSNLVL 302
SS L+A VGG R S + R + SSQ+ P N + + S+ +N ++
Sbjct: 56 SSAALAAGVGGTRASGYTHRFSIRPSSQTYNRYPNGGNSAGSDMYSTSPQNNSIV 110
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 252 QDNNGLIPRNEFIDGIVNTKFDTSRLEMGAVADLFDRNGSGLIDWEEF 395
+D NG I E + + S+ E+ + D +G G+I++EEF
Sbjct: 96 KDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEF 143
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 720 WDTPSAKINCSRSSMLVRPLALQGSFFTRNSSSATQP 610
W PSA ++ L+ + S+F S+S+T P
Sbjct: 193 WKNPSASVHDKALLYLILSIGSAASYFDLQSNSSTLP 229
>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
L28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 176
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +2
Query: 623 LDEFLVKNDPCRAK--GRTNIELR 688
LDE+LVK+ P R K G +ELR
Sbjct: 91 LDEYLVKSTPSRLKSLGLRGVELR 114
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,751
Number of Sequences: 5004
Number of extensions: 62689
Number of successful extensions: 216
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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